! #1/20 1199151382 0 0 100644 3604 ` __.SYMDEF SORTEDHXHXHTHX+X4XBX#LXXXaXHH!H-HiXrXHHRH }XX@XXbH#*#:#lHuHHXXXHHXXXHG#XXH @HHHpkHHH &HX-H<HXLH[HtHHXX_#HH$XHHH)XdhwhHH H3XHl#w##9HJH##YHgHqHHHH#HH?X@@HHH#>HIX@Hp HH!H#7H#4 [XEHYHnHHHH @HS a q H@x   @H000HH0 0 @ _AddCommandsFromFile_AddHelp_AppendUsage_ArgFile_ArgFileForce_BaseName_CheckUsage_ClCheck_ClStub_DirName_Directory_EndsWith_Extension_FileDate_FileTime_GetArg_GetBool_GetBoolean_GetFloat_GetHelp_GetInt_GetRestrictedArg_GetSeed_LegalString_MakeLegal_NextArg_NextFile_Now_OpenFile_PrintUsage_RootName_SplitOnSeparator_comment_OpenFileInEnvPath_OpenFileInSearchPath_next_line_not_blank_read_line_skip_comments_uncomment_AccNos_AddDatabase_AdjustMatrix_AltschulResidueFrequencies_CleanLine_ComplementSeq_CopyMatrix_DayhoffResidueFrequencies_DownDase_EmblSeqComment_FindNext_FreeSeq_FreeSequenceIndex_GemResidueFrequencies_GetFastaSeq_GetFastaSeqs_GetOffset_GetSeqFrom_file_IntoSequence_IsNucleotide_IsSequenceSpec_Iub2Regexp_IubRegexp_IubToRegexp_KvCmp_MakeEmblIndex_MakeFastaIndex_MakeNbrfIndex_ModelResidueFrequencies_NbrfSeqComment_NewSeq_NextSeq_NextSeq_from_database_spec_OpenDatabase_OpenEmblDatabase_OpenFastaDatabase_OpenFileInSeqPath_OpenFileInSeqPathArg_OpenNbrfDatabase_PseudoResidueFrequencies_ReadBlastMatrix_ReadFreqTable_ReadSequence_Read_Seq_Read_embl_Sq_Read_fasta_Sq_Read_nbrf_Sq_ResidueFrequencies_ReverseSeq_RobinsonResidueFrequencies_SeekTo_SeqComment_SeqDup_SkipFastaSeq_SubSeq_UpCase_WhichDatabase_WhichFileOfSequences_WriteFastaSq_compile_embl_index_compile_fasta_index_compile_nbrf_index_complement_base_createSequenceIndex_free_ct_hash_name_nextSeqFrom_list_file_reverse_protein_seq_rewind_spec_EmpiricalGEM_HSP_length_correction_KarlinAltschulStatistics_associated_dam_eqn_entropy_H_gapped_theta_gem_statistics_get_h_iglehart_lambda_func_lower_objective_solve_for_lambda_upper_objective_Fcmp_Icmp_Rstrcmp_SStrcmp_Strcmp_fcmp_icmp_nStrcmp_uscmp_CheapSeqToProfile_FreeCheapProfile_FreePreProcess_FreeProfile_GetPreProcessedProfile_NextProfile_PsiLambda_PutPreProcessedProfile_ReadBinaryProfile_ReadPreProcessedProfile_ReadProfile_ResidueMapping_SeqToProfile_WriteBinaryProfile_WritePreProcessedProfile_GetPsiH_KarlinAltschulProfileStatistics_SetDefaultParameters_AlignProteinToProfile_IterativelyIncreaseGapPenalty_PercentIdentity_PrintProteinProfileAlignment_ProteinBacktrack_SWScoreProteinToProfile_IslandCmp_TopAlignProteinToProfile#1/12 1199151376 0 0 100644 29908 ` cl.o X__text__TEXT4B__data__DATA4__cstring__TEXT@V__bss__DATA __picsymbolstub2__TEXTr)__la_sym_ptr2__DATARp./__nl_symbol_ptr__DATA8__textcoal_nt__TEXT @0Z PGG#j/:U(]}}uu <$t$$t ]u}]Í/t$ |$D$$$~UWVS,E }ZD$$D$&UD$$D$D$ EU|$D$$t%4$D$D$|u<=!Ш€=!Шu=D$ E$D$D$X~:T$D$U$t1,[^_]ËU ㍃UD$T$$|EDUWVu E$T~U<$D$#t1^_]ËUDUWVSE}€=!Шt€=!ШuE[^_]ÐUWVSE,U }D$$D$UD$$D$D$ EU|$D$$t%4$D$T$:u<=!Ш€=!Шu=D$ E$D$D$~:T$D$U$t1,[^_]ËU ㍃UD$T$$|EDUWVSEu }D$FD$ D$<$9~"U<$D$t 1҃[^_]ÐU8]u}} .uD$ D$4$D$ED$ E|$D$4$t]u}]ÍD$$E4$D$ ED$D$D$$|u 넍D$$St׍D$$7tD$$tD$$u끍D$$t܍D$$tD$$tE4$D$ED$1҅D$ JUWVSQ,E }D$ D$<$D$?- |$D$$u~9U<$D$(t[UD$$ t/NjUE<$T$ U D$T$D,[^_]ËU E GD$ D$$PD$ UWVS!E U}D$$D$D$ M1<=!Шt1<=!Шu=UD$ T$D$4$cEUD$|$$|t!D$E $Y[^_]Ã~*U t$T$U$.Ƀ1뾋ED$lUWVS,u }~ U<-!Шu1,[^_]Í<$D$Et֋U<$D$EEEEE1Eу9Mv뒐UWVM uE 8.E 1у<1<.…!Шt<1<.…!Шu<.t1у1.E D$D$1у<1.t ^_]1񐐐U1WVuу<1t12<2u^_]U1WUVэL qI;u!Шt!/t;u!Шt/u;ut ^E_]ËE8/t f./@}f/ܐU(]uu}4$} tLE 8tD1E р|/t;D$t$ c D$<$|$4$+]u}]ËE t$ D$ US E$] T$$[]ÐUEÐUWVS,Eut$ED$ ED$E$t u t_ u u2e D$ D$ D$E$E,[^_]Íe D$ D$ ̍e D$ D$ 벋E 4$D$EZE t$D$ D$$-U(E]u}}uD$ ED$t$<$dtTE 4$D$t ]u}]ËE t$D$ D$u$K$&|$ Ux]u uD$4$&1҅t$ ED$4$ 1҅DU]u]ÐU]u u}fDž?D$4$ t$h ED$4$@ t]u}]ÍE$ <$D$I D$ .t< t uUWVS}|$$O tjv u狳D$$b F <$2 E $ FE$ F[^_]ËEt.tD$$ 느UWVSE9⍀P% ⍀P ⍀P|⍀|Pg⍀gPR⍀RP=⍀=P(⍀(Pvq⍀P]X⍀PD?⍀P+&⍀P ⍀P⍀P⍀P⍀P 9Rk3Le~-F$Ë$# j{fh h [7b$ ofUMx? h s{p\O[ Oh |oA\MIA=h % h +Y"h h`TLA93*h =~o]B=9h    h S   S @S  l O h 2 % 3  @3  3 3 3 3  3 3 3 p 3 \ / h     h h   h r d h 5 c J > h n\Kh pH,h fTJ8. {mMh kSXSOh L*h d_[h 1ymS} ztq}h l`SA@* h  >>g  %%g   x rg m g_Yg T NF@g ; 5-'g " g  g  vvg  ]]g  DDg  ++g  ~xg s me_g Z TLFg A ;3-g ( "~~g  zzg  v|v|g  rcrcg  nJnJg  j1j1g  ff~g y sbkbeg ` Z^R^Lg G AZ9Z3g . 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A}4J!j.ypaY(>Q6_comment_OpenFile___i686.get_pc_thunk.bx_GetFloat_NextArg_ClStub_GetInt_ClCheck_GetBool_GetBoolean_GetArg_NextFile_Extension_BaseName_DirName_Directory_RootName_MakeLegal_ArgFile_ArgFileForce_FileTime_FileDate_AppendUsage_CheckUsage_AddHelp_GetHelp_PrintUsage_AddCommandsFromFile_LegalString_SplitOnSeparator_Now_EndsWith_GetSeed_GetRestrictedArg___i686.get_pc_thunk.axdyld_stub_binding_helper__DefaultRuneLocale___sF_free_time_strncpy___maskrune_rewind_skip_comments_fwrite_strncmp_strdup_calloc_ctime_stat_fclose_strcpy_strcasecmp_bzero_strcmp_sscanf_sprintf_exit_fprintf_fopen/mnt/gmirror/ports/biology/ariadne/work/SRC-1.3/cl.cgcc2_compiled.OpenFile:F(0,1)=*(0,2)=(0,3)=xs__sFILE:FILE:t(0,2)__sFILE:T(0,3)=s88_p:(0,4)=*(0,5)=@s8;r(0,5);0;255;,0,32;_r:(0,6)=r(0,6);-2147483648;2147483647;,32,32;_w:(0,6),64,32;_flags:(0,7)=@s16;r(0,7);-32768;32767;,96,16;_file:(0,7),112,16;_bf:(0,8)=xs__sbuf:,128,64;_lbfsize:(0,6),192,32;_cookie:(0,9)=*(0,10)=(0,10),224,32;_close:(0,11)=*(0,12)=f(0,6),256,32;_read:(0,13)=*(0,14)=f(0,6),288,32;_seek:(0,15)=*(0,16)=f(0,17)=(0,18)=(0,19)=(0,20)=@s64;r(0,20);01000000000000000000000;0777777777777777777777;,320,32;_write:(0,21)=*(0,22)=f(0,6),352,32;_ub:(0,8),384,64;_extra:(0,23)=*(0,24)=xs__sFILEX:,448,32;_ur:(0,6),480,32;_ubuf:(0,25)=ar(0,26)=r(0,26);0000000000000;0037777777777;;0;2;(0,5),512,24;_nbuf:(0,27)=ar(0,26);0;0;(0,5),536,8;_lb:(0,8),544,64;_blksize:(0,6),608,32;_offset:(0,17),640,64;;unsigned char:t(0,5)int:t(0,6)short int:t(0,7)__sbuf:T(0,8)=s8_base:(0,4),0,32;_size:(0,6),32,32;;void:t(0,10)fpos_t:t(0,17)__darwin_off_t:t(0,18)__int64_t:t(0,19)long long int:t(0,20)long unsigned int:t(0,28)=r(0,28);0000000000000;0037777777777;filename:p(0,29)=*(0,30)=r(0,30);0;127;mode:p(0,29)char:t(0,30)mode:r(0,29)fp:r(0,1)GetFloat:F(0,6)format:p(0,29)variable:p(0,31)=*(0,32)=r(0,6);4;0;argc:p(0,6)argv:p(0,33)=*(0,29)float:t(0,32)argc:r(0,6)t:(0,32)s:r(0,29)Format:(0,34)=ar(0,26);0;255;(0,30)NextArg:F(0,29)format:p(0,29)argc:p(0,6)argv:p(0,33)argc:r(0,6)s:r(0,29)_stub.0ClStub:F(0,29)format:p(0,29)stub:V(0,34)s:r(0,29)GetInt:F(0,6)format:p(0,29)variable:p(0,35)=*(0,6)argc:p(0,6)argv:p(0,33)argc:r(0,6)t:(0,6)s:r(0,29)Format:(0,34)ClCheck:F(0,6)format:p(0,29)argc:p(0,6)argv:p(0,33)argc:r(0,6)GetBool:F(0,6)format:p(0,29)bool:p(0,35)argc:p(0,6)argv:p(0,33)bool:r(0,35)reply:(0,34)GetBoolean:F(0,6)format:p(0,29)bool:p(0,35)argc:p(0,6)argv:p(0,33)noformat:(0,34)Argc:r(0,6)GetArg:F(0,6)format:p(0,29)arg:p(0,29)argc:p(0,6)argv:p(0,33)argc:r(0,6)s:r(0,29)Format:(0,34)s:r(0,29)Format:(0,34)NextFile:F(0,1)filename:p(0,29)argc:p(0,6)argv:p(0,33)argc:r(0,6)fp:(0,1)i:(0,6)Extension:F(0,29)filename:p(0,29)ext:p(0,29)n:r(0,6)n:r(0,6)BaseName:F(0,29)filename:p(0,29)n:r(0,6)m:r(0,6)DirName:F(0,29)pathname:p(0,29)s:r(0,29)s:r(0,29)Directory:F(0,29)filename:p(0,29)dir:p(0,29)name:(0,36)=ar(0,26);0;511;(0,30)name:(0,36)RootName:F(0,29)filename:p(0,29)MakeLegal:F(0,29)filename:p(0,29)ArgFile:F(0,1)format:p(0,29)mode:p(0,29)argc:p(0,6)argv:p(0,33)filename:p(0,29)argc:r(0,6)argv:r(0,33)filename:r(0,29)fp:(0,1)fp:(0,1)ArgFileForce:F(0,1)format:p(0,29)mode:p(0,29)argc:p(0,6)argv:p(0,33)filename:p(0,29)argc:r(0,6)argv:r(0,33)filename:r(0,29)fp:r(0,1)FileTime:F(0,6)filename:p(0,29)fp:r(0,1)buf:(0,37)=xsstat:stat:T(0,37)=s96st_dev:(0,38)=(0,39)=(0,40)=(0,6),0,32;st_ino:(0,41)=(0,42)=(0,43)=(0,44)=r(0,44);0000000000000;0037777777777;,32,32;st_mode:(0,45)=(0,46)=(0,47)=(0,48)=@s16;r(0,48);0;65535;,64,16;st_nlink:(0,49)=(0,47),80,16;st_uid:(0,50)=(0,51)=(0,43),96,32;st_gid:(0,52)=(0,53)=(0,43),128,32;st_rdev:(0,38),160,32;st_atimespec:(0,54)=xstimespec:,192,64;st_mtimespec:(0,54),256,64;st_ctimespec:(0,54),320,64;st_size:(0,55)=(0,18),384,64;st_blocks:(0,56)=(0,57)=(0,19),448,64;st_blksize:(0,58)=(0,59)=(0,40),512,32;st_flags:(0,43),544,32;st_gen:(0,43),576,32;st_lspare:(0,40),608,32;st_qspare:(0,60)=ar(0,26);0;1;(0,19),640,128;;dev_t:t(0,38)__darwin_dev_t:t(0,39)__int32_t:t(0,40)ino_t:t(0,41)__darwin_ino_t:t(0,42)__uint32_t:t(0,43)unsigned int:t(0,44)mode_t:t(0,45)__darwin_mode_t:t(0,46)__uint16_t:t(0,47)short unsigned int:t(0,48)nlink_t:t(0,49)uid_t:t(0,50)__darwin_uid_t:t(0,51)gid_t:t(0,52)__darwin_gid_t:t(0,53)timespec:T(0,54)=s8tv_sec:(0,61)=(0,62)=(0,63)=r(0,63);-2147483648;2147483647;,0,32;tv_nsec:(0,63),32,32;;off_t:t(0,55)blkcnt_t:t(0,56)__darwin_blkcnt_t:t(0,57)blksize_t:t(0,58)__darwin_blksize_t:t(0,59)time_t:t(0,61)__darwin_time_t:t(0,62)long int:t(0,63)FileDate:F(0,29)filename:p(0,29)fp:r(0,1)buf:(0,37)date:(0,34)t:r(0,29)fp:r(0,1)buf:(0,37)date:(0,34)t:r(0,29)_use_begin_use_end_help_textAppendUsage:F(0,10)format:p(0,29)text:p(0,29)def:p(0,29)overide:p(0,6)text:r(0,29)def:r(0,29)use:r(0,64)=*(0,65)=(0,66)=xsuse_list:USE_LIST:t(0,65)use_list:T(0,66)=s16format:(0,29),0,32;text:(0,29),32,32;def:(0,29),64,32;next:(0,67)=*(0,66),96,32;;/usr/include/ctype.hcl.cCheckUsage:F(0,6)fp:p(0,1)argc:p(0,6)argv:p(0,33)argc:(0,6)u:r(0,64)errors:(0,6)arg:(0,29)noarg:(0,29)u:r(0,64)errors:(0,6)arg:(0,29)noarg:(0,29)_c:r(0,68)=(0,6)__darwin_ct_rune_t:t(0,68)AddHelp:F(0,10)string:p(0,29)GetHelp:F(0,10)argc:p(0,6)argv:p(0,33)argv:r(0,33)want_help:r(0,6)errors:r(0,6)PrintUsage:F(0,10)argc:p(0,6)argv:p(0,33)stop:p(0,6)argv:r(0,33)u:r(0,64)name:(0,34)_com_depth/usr/include/ctype.hcl.cAddCommandsFromFile:F(0,6)argc:p(0,6)argv:p(0,33)nargc:p(0,35)nargv:p(0,69)=*(0,33)fp:(0,1)comfile:(0,34)line:(0,34)s:r(0,29)targv:(0,33)n:(0,6)targc:(0,6)_c:r(0,68)_c:r(0,68)LegalString:F(0,6)string:p(0,29)strings:p(0,33)size:p(0,6)value:p(0,35)size:r(0,6)value:r(0,35)i:r(0,6)SplitOnSeparator:F(0,33)string:p(0,29)separator:p(0,6)items:p(0,35)separator:(0,30)item:(0,33)s:r(0,29)t:(0,29)len:r(0,6)item:(0,33)s:r(0,29)t:(0,29)len:r(0,6)_temp.1Now:F(0,29)t:r(0,29)temp:V(0,34)t:r(0,29)temp:V(0,34)EndsWith:F(0,6)text:p(0,29)suffix:p(0,29)n:r(0,6)m:r(0,6)GetSeed:F(0,6)seed:p(0,35)argc:p(0,6)argv:p(0,33)argc:r(0,6)argv:r(0,33)s:(0,6)GetRestrictedArg:F(0,6)format:p(0,29)arg:p(0,29)argc:p(0,6)argv:p(0,33)stringc:p(0,6)strings:p(0,33)value:p(0,35)arg:r(0,29)argc:r(0,6)argv:r(0,33)stringc:r(0,6)strings:r(0,33)value:r(0,35)comment:G(0,6)use_begin:S(0,64)use_end:S(0,64)help_text:S(0,29)com_depth:S(0,6) #1/20 1199151376 0 0 100644 4236 ` searchpath.o8 T__text__TEXT T<__data__DATA `__cstring__TEXT `__picsymbolstub2__TEXTh*__la_sym_ptr2__DATA__textcoal_nt__TEXT3 @tN X PBBF<UWV1S,E}$E䍃UED$$PtOU܋UD$E܉T$ D$<$U <$T$uE$D$uU$t ,[^_]ËE<$D$qU ET$$uʐUE$'UD$E T$ D$E$:%s/%s⍀P⍀P⍀Pk⍀kPV⍀VPojA⍀APVQ,⍀,P=!:Sl$Ë$sdG =+  " E M D M ~D yM s}k}eD `M ZdRdLD GM AK9K3D .M (2 2D M D  HJGFILKHJGFILKdd<DDDD"D$D%)D&AD(ND)hD+}D-D0D:D2D3D6D3D6D7$*63>OTq(F Sfw@@@$@%@$D?D@DA $?>> >>*@>7@>C@>T$0Ud 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HEhl_uncomment_read_line_next_line_not_blank___i686.get_pc_thunk.bx_skip_comments___i686.get_pc_thunk.axdyld_stub_binding_helper__DefaultRuneLocale___maskrune_feof_getc/mnt/gmirror/ports/biology/ariadne/work/SRC-1.3/readline.cgcc2_compiled.uncomment:F(0,1)=(0,1)void:t(0,1)string:p(0,2)=*(0,3)=r(0,3);0;127;char:t(0,3)read_line:F(0,4)=r(0,4);-2147483648;2147483647;int:t(0,4)file:p(0,5)=*(0,6)=(0,7)=xs__sFILE:string:p(0,2)FILE:t(0,6)__sFILE:T(0,7)=s88_p:(0,8)=*(0,9)=@s8;r(0,9);0;255;,0,32;_r:(0,4),32,32;_w:(0,4),64,32;_flags:(0,10)=@s16;r(0,10);-32768;32767;,96,16;_file:(0,10),112,16;_bf:(0,11)=xs__sbuf:,128,64;_lbfsize:(0,4),192,32;_cookie:(0,12)=*(0,1),224,32;_close:(0,13)=*(0,14)=f(0,4),256,32;_read:(0,15)=*(0,16)=f(0,4),288,32;_seek:(0,17)=*(0,18)=f(0,19)=(0,20)=(0,21)=(0,22)=@s64;r(0,22);01000000000000000000000;0777777777777777777777;,320,32;_write:(0,23)=*(0,24)=f(0,4),352,32;_ub:(0,11),384,64;_extra:(0,25)=*(0,26)=xs__sFILEX:,448,32;_ur:(0,4),480,32;_ubuf:(0,27)=ar(0,28)=r(0,28);0000000000000;0037777777777;;0;2;(0,9),512,24;_nbuf:(0,29)=ar(0,28);0;0;(0,9),536,8;_lb:(0,11),544,64;_blksize:(0,4),608,32;_offset:(0,19),640,64;;unsigned char:t(0,9)short int:t(0,10)__sbuf:T(0,11)=s8_base:(0,8),0,32;_size:(0,4),32,32;;fpos_t:t(0,19)__darwin_off_t:t(0,20)__int64_t:t(0,21)long long int:t(0,22)long unsigned int:t(0,30)=r(0,30);0000000000000;0037777777777;string:r(0,2)c:r(0,4)i:r(0,4)c:r(0,4)i:r(0,4)next_line:F(0,4)file:p(0,5)c:r(0,4)c:r(0,4)/usr/include/ctype.hreadline.cnot_blank:F(0,4)string:p(0,2)_c:r(0,31)=(0,4)__darwin_ct_rune_t:t(0,31)_c:r(0,31)_c:r(0,31)skip_comments:F(0,4)file:p(0,5)string:p(0,2)string:r(0,2)n:r(0,4) #1/20 1199151377 0 0 100644 73116 ` seq_util.oH tdS __text__TEXT|Dd`W__data__DATA|DG__cstring__TEXTDG__bss__DATATt[__literal4__TEXT,JM__literal8__TEXTHK@N__picsymbolstub2__TEXTLYOx__la_sym_ptr2__DATAREV8AA__nl_symbol_ptr__DATASLW__textcoal_nt__TEXTS TW @P(`+ P__H+@UVEt$D$ ED$E$R1҅tE4$D$ ED$E D$_R^]ÐUE]uD$4$ RE 4$D$QE4$D$ DD$ED$Q]u]ÐU]u+u4$kQt ]u]É4$D$ $KNjE$Jt$D$ >D$E$t$GD$ >D$E$ct$GD$ I>D$E$=W҉GGt wtu<$ >!ʀ)փ…!ШuɋE$:@E$T>^_]ÐU1W VSZ<ME$=>t ƒ!Шu1MDž'D$$@D$$'@1E$y=BCD5@uˉ=뽍Ƅ/$@BC ƒ!Шt'E$}=D5@u1 ƒ!Шt3 =M 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DžXLR=~DžD^=DR~Džaa$փzƉ~ZsEp$!<[^_]ÐUWVS,D$$s"UZ B f(~|19}CUBM؃$!%MXƋE;x |Z AX ƃZ~f.vA^ƃZ~,[^_]UWVSD$$!ƋEZMP f(څZQAZUZYpZ] ZaZeZi(Zm8Zq@ZuHZy`Z}XZhZ0ZZZZZZXƃZ~A*M f(Y^ƃZ~19}9UB$mXƋE;x |ZMf(ӸAXƃZ~f.vA^ƃZ~[^_]UWVAS,D$$z<ZhDL T(\0d8l@tH|X`ZlhpPpX Z~A4$MM^ǃZ~Ӄ,[^_]ÐUWVAS,D$$ZZZZZZ8 ZH(Z0Z@ZXZ`ZhZpZZZZZPZpXZ~A4$] ]^ǃZ~Ӄ,[^_]ÐUWVAS4,D$$ZZZZ pZ$ Z(Z,Z0(Z48Z8@Z<HZ@`ZDXZHhZL0ZPZTZXZ\PZ`ZdpX Z~A4$M/M^ǃZ~Ӄ,[^_]ÐUWVASX,D$$PZXP` h(p0Z8x@HX`ZhpX Z~A4$M[M^ǃZ~Ӄ,[^_]ÐU(]u}u utgutM uu]u}]ËED$ D$l$1{붐UWVD$$vD$UƋB $[1ɉDŽ~1E;x | ^_]ËUB$‹M©D5Y*PuʋQ/2°DžL$4$ZMD5*14$D$2;…!Ш4$T$L$I$T$;…!ШuD$$MDžFMD5u;*t2~$=l[^_]Ë1ǀD5u*t ~덋u݉ $7<$-4$k<$attlD$<$$5D$4$‹D$$at$5D$4$ <$ T$ D$L$4$w ZS;t$ D$t$$ $U&lEunǁlǁiǁjjǁjǁjǁiǁrjǁ6jǁjǁ:jǁjhÐUWAVS舾\|E$ݝ% |$A $ U $D$h Z~݃$ Z~ك AݝEf.U f.݅ݜU f.vf.f݅ݔ\$(D$ L$U|$D$T$4$ ZU*E$ك ^ȿAݝAE f.f.M MXM$^ *\,Z~Z~A|$A $ U  $D$ Z~݃$ Z~E \[^_]ËU ^ $M E }^$M 5E "UD$u}u$v p D$4$^ M G1t E $. u}]SEQ_DATA_HOMEERROR could not open database %s rdatindex ! embl format database %s opened: %d sequences ACACCESSION//>>>>fasta ! fasta format database %s opened: %d sequences seqref ! nbrf format database %s opened: %d sequences ERROR: too many databases! %s %lu %s %lu %lu IDID %sDESQSQ Sequence %d ! ERROR on Read_embl_Sq: pointer offset for %s wrong! (gets %s instead) %s %d >%s %s %-60.60s REALLOC FAILED getting %d bytes in GetFastaSeq >%s ! ERROR on Read_fasta_Sq: pointer offset for %s wrong! (gets %s instead) >>>>%s ! ERROR on Read_nbrf_Sq: pointer offset for %s wrong! (gets %s instead) wcompiling embl format index for database %s ... %-10s %lu %s... done. %lu sequences indexed compiling fasta format index for database %s ... compiling nbrf format index for database %s ... %-10s %10lu %10lu ! ERROR when indexing: different names %s %s ERROR: too many files of sequences! [ag][ctu][ac][gtu][cg][atu][actu][cgtu][acg][agtu][acgtu]%c %lf gemrobinsondayhoffaltschulERROR: protein model %s unknown BLASTMAT %daa/%sERROR : parse error in %s %s Original matrix:%c %2dlogratio %c %e %e %e %e %e ?S GFF¼FtFFFGFFG FFFFFF0E`bFFlABpAXBtB BBAdB`BBA4BDBBhBBPABS GFF¼FtFFFGFFG FFFFFF0E`bFF@@|=??QU@\(@@(\oG@p= H@(\C@ףp= 'V@(\@@RqB@QT@ףp= WU@ףp= 7D@ףp= WI@zG!C@33333sD@QeQ@QEM@Gz.P@{G$@Q=@)\(@Gz@Q@@Q @= ףp=@(\@@{G"@ @p= ף@(\@Gz@ףp= W @Q@(\@(\?{Gz@sT⍀TP_Z?⍀?PFA*⍀*P-(⍀P⍀P⍀Pݲ⍀PɲIJ⍀P鰲諲⍀P闲蒲⍀P~y⍀Pe`m⍀mPLGX⍀XP3.C⍀CP.⍀.P⍀P⍀Pϱʱ⍀P鶱豱⍀P靱蘱⍀P鄱⍀Pkf⍀PRM⍀P94q⍀qP \⍀\PG⍀GP2⍀2Pհа⍀P鼰跰⍀P飰螰⍀P銰腰⍀Pql⍀PXS⍀P?:⍀P&!⍀P u⍀uP`⍀`Pۯ֯K⍀KP¯软6⍀6P驯褯!⍀!P鐯苯 ⍀ Pwr⍀P^Y⍀PE@⍀P,'⍀P⍀P⍀Pܮy⍀yPȮîd⍀dP鯮誮O⍀OP閮葮:⍀:P}x%⍀%Pd_⍀PKF⍀P2-⍀P⍀P⍀P⍀Pέɭ⍀P鵭谭}⍀}P霭藭h⍀hP郭~S⍀SPje>⍀>PQL)⍀)P83⍀PLLLLLM+MDM]MvMMMMMM N%N>NWNpNNNNNNOO8OQOjOOOOOOPP2PKPdP}PPPPPPQ,QEQ^QwQQQQQQ R&R?RXRqRRRRR$Ë $Ë$jDSD;DCCCCyCB@KxABBJxAA@KxAAAAA JxAAJxAAAIxAtA aA@SA@IA@?A@5A@+A@!A@A@ A@A@@@@@@@@ @@@I;@j@b@P@I;<@@???j?`?>>S;>S;~>8>==P=S;"=<I;<I;<S;<S;Q<-<<;;D;;;I;; E;.;;;:V:;::: ::9S99I999I99~I99uI99qI9|9 <99L79xL78pL78hL78`L78XL78PL78HL78@L78/'/ /.0J-.n.HK-W.I.,J-'..iI---- -[-1-$--,,},T,=,+S*+++f+^+N+G*H+$+**D** ******aI****ZI****TI****MI****FI*|**v*@I*p**j*;I*d**^*5I*X**R*0I*L**F**I*@**6**0*%I**** ))G).)(((Sk(g( G(('''F'&&&& p&G&c&C& 1&&+&&& & %%%%%%%%%%%%%%%%%%%%%%%%%%{%%q%%_%%T%%K%%%% %$$$$$$$Z$R$qF#?$|#9$*$x#$$|#$$x#$$###t####t## q#[#E#$#"G""" ""e"C"G/"+" " ""I!!S!!!D!!p!!p!!!p!!!|!D!p!@!j!V!p!I!.!!(!@!!p!!     m F  HSGrdJ8H_SG+G%!ES`HDGvErED} `SSIG91Gx`GNAS7 H$D G&ED SGxQ3GGreS[GH9D/GDD aP+S?@G?3S?S?FS?,S?+G?xU; #SF_SA3SlUMqF9&F rFeN-uSS)S#SDS1 }F7 zFrFqF o7&jFS  S  F aS  S   E t ^ E O A + E     E  E    G #      z k ?      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:m&"&Fd$dYIp%6Pv~-Av_OpenFileInSeqPathArg_OpenFileInSeqPath___i686.get_pc_thunk.bx_OpenDatabase_OpenEmblDatabase_AccNos_SeqComment_EmblSeqComment_NbrfSeqComment_OpenFastaDatabase_OpenNbrfDatabase_WhichDatabase_AddDatabase_MakeEmblIndex_MakeFastaIndex_MakeNbrfIndex_Read_Seq_ReadSequence_GetOffset_Read_embl_Sq_GetFastaSeqs_WriteFastaSq_SkipFastaSeq_GetFastaSeq_Read_fasta_Sq_Read_nbrf_Sq_FindNext_hash_name_compile_embl_index_compile_fasta_index_compile_nbrf_index_SeekTo_FreeSeq_WhichFileOfSequences_nextSeqFrom_list_file_NextSeq_from_database_spec_IsSequenceSpec_rewind_spec_NextSeq_complement_base_free_ct_ReverseSeq_reverse_protein_seq_ComplementSeq_SubSeq_DownDase_UpCase_CleanLine_IubToRegexp_Iub2Regexp_IubRegexp_GetSeqFrom_file_SeqDup_IntoSequence_KvCmp_ReadFreqTable_ResidueFrequencies_PseudoResidueFrequencies_DayhoffResidueFrequencies_AltschulResidueFrequencies_RobinsonResidueFrequencies_GemResidueFrequencies_ModelResidueFrequencies_createSequenceIndex_FreeSequenceIndex_CopyMatrix_ReadBlastMatrix_IsNucleotide___i686.get_pc_thunk.cx_AdjustMatrix_NewSeq___i686.get_pc_thunk.axdyld_stub_binding_helper__DefaultRuneLocale___sF_log_putchar_puts_strtok_sprintf_OpenFileInSearchPath_getenv_fcmp_fread___toupper_skip_comments_OpenFile_fclose_printf_strncmp_read_line_ungetc_fgetc_realloc___tolower___maskrune_getc_sscanf_strchr_rewind_fscanf_fwrite_strcmp_strcat_ftell_fseek_free_strdup_calloc_exit_fprintf_OpenFileInEnvPath_Extension_strcpy_GetArg/mnt/gmirror/ports/biology/ariadne/work/SRC-1.3/seq_util.cgcc2_compiled.OpenFileInSeqPathArg:F(0,1)=*(0,2)=(0,3)=xs__sFILE:FILE:t(0,2)__sFILE:T(0,3)=s88_p:(0,4)=*(0,5)=@s8;r(0,5);0;255;,0,32;_r:(0,6)=r(0,6);-2147483648;2147483647;,32,32;_w:(0,6),64,32;_flags:(0,7)=@s16;r(0,7);-32768;32767;,96,16;_file:(0,7),112,16;_bf:(0,8)=xs__sbuf:,128,64;_lbfsize:(0,6),192,32;_cookie:(0,9)=*(0,10)=(0,10),224,32;_close:(0,11)=*(0,12)=f(0,6),256,32;_read:(0,13)=*(0,14)=f(0,6),288,32;_seek:(0,15)=*(0,16)=f(0,17)=(0,18)=(0,19)=(0,20)=@s64;r(0,20);01000000000000000000000;0777777777777777777777;,320,32;_write:(0,21)=*(0,22)=f(0,6),352,32;_ub:(0,8),384,64;_extra:(0,23)=*(0,24)=xs__sFILEX:,448,32;_ur:(0,6),480,32;_ubuf:(0,25)=ar(0,26)=r(0,26);0000000000000;0037777777777;;0;2;(0,5),512,24;_nbuf:(0,27)=ar(0,26);0;0;(0,5),536,8;_lb:(0,8),544,64;_blksize:(0,6),608,32;_offset:(0,17),640,64;;unsigned char:t(0,5)int:t(0,6)short int:t(0,7)__sbuf:T(0,8)=s8_base:(0,4),0,32;_size:(0,6),32,32;;void:t(0,10)fpos_t:t(0,17)__darwin_off_t:t(0,18)__int64_t:t(0,19)long long int:t(0,20)long unsigned int:t(0,28)=r(0,28);0000000000000;0037777777777;format:p(0,29)=*(0,30)=r(0,30);0;127;ext:p(0,29)mode:p(0,29)argc:p(0,6)argv:p(0,31)=*(0,29)fullname:p(0,29)char:t(0,30)ext:r(0,29)mode:r(0,29)argc:r(0,6)argv:r(0,31)fullname:r(0,29)buf:(0,32)=ar(0,26);0;255;(0,30)OpenFileInSeqPath:F(0,1)BaseName:p(0,29)ext:p(0,29)mode:p(0,29)fullname:p(0,29)ext:r(0,29)mode:r(0,29)fullname:r(0,29)buf:(0,32)OpenDatabase:F(0,33)=*(0,34)=(0,35)=s32database:(0,29),0,32;type:(0,36)=(0,37)=eEMBL:0,NBRF:1,FASTA:2,SINGLE:3,;,32,32;sequences:(0,6),64,32;length:(0,28),96,32;datafile:(0,1),128,32;textfile:(0,1),160,32;indexfile:(0,1),192,32;index:(0,38)=*(0,39)=*(0,40)=(0,41)=xshash_list:,224,32;;DATABASE:t(0,34)WHAT_KIND_OF_DATABASE:t(0,36) :T(0,37)HASH_LIST:t(0,40)hash_list:T(0,41)=s16name:(0,29),0,32;offset:(0,28),32,32;text_offset:(0,28),64,32;next:(0,42)=*(0,41),96,32;;name:p(0,29)db:r(0,33)OpenEmblDatabase:F(0,33)name:p(0,29)buf:(0,32)db:r(0,33)AccNos:F(0,29)seq:p(0,43)=*(0,44)=(0,45)=s20name:(0,29),0,32;database:(0,33),32,32;desc:(0,29),64,32;len:(0,6),96,32;s:(0,29),128,32;;SEQUENCE:t(0,44)SeqComment:F(0,29)seq:p(0,43)key:p(0,29)key:r(0,29)_buf.0EmblSeqComment:F(0,29)seq:p(0,43)key:p(0,29)line:(0,32)text_offset:(0,28)offset:r(0,28)end_pos:(0,28)buf:V(0,46)=ar(0,26);0;9999;(0,30)_buf.1NbrfSeqComment:F(0,29)seq:p(0,43)key:p(0,29)line:(0,32)end_pos:(0,28)buf:V(0,46)line:(0,32)end_pos:(0,28)buf:V(0,46)OpenFastaDatabase:F(0,33)name:p(0,29)buf:(0,32)db:r(0,33)OpenNbrfDatabase:F(0,33)name:p(0,29)buf:(0,32)db:r(0,33)_database_count_databasesWhichDatabase:F(0,33)database_name:p(0,29)n:r(0,6)AddDatabase:F(0,10)db:p(0,33)MakeEmblIndex:F(0,10)db:p(0,33)n:r(0,6)offset:(0,28)item:r(0,39)name:(0,32)MakeFastaIndex:F(0,10)db:p(0,33)n:r(0,6)offset:(0,28)item:r(0,39)name:(0,32)MakeNbrfIndex:F(0,10)db:p(0,33)n:r(0,6)offset1:(0,28)offset2:(0,28)item:r(0,39)name:(0,32)Read_Seq:F(0,43)name:p(0,29)sname:r(0,29)d:r(0,33)ReadSequence:F(0,43)name:p(0,29)database:p(0,33)database:r(0,33)text_offset:(0,28)offset:r(0,28)GetOffset:F(0,28)name:p(0,29)database:p(0,33)text_offset:p(0,47)=*(0,28)database:r(0,33)n:r(0,6)h:r(0,39)/usr/include/ctype.hseq_util.cRead_embl_Sq:F(0,43)name:p(0,29)database:p(0,33)offset:p(0,28)offset:r(0,28)sname:(0,32)line:(0,48)=ar(0,26);0;511;(0,30)c:r(0,6)seq:(0,43)len:(0,6)n:(0,6)__darwin_ct_rune_t:t(0,49)=(0,6)sname:(0,32)line:(0,48)c:r(0,6)seq:(0,43)len:(0,6)n:(0,6)GetFastaSeqs:F(0,50)=*(0,43)fp:p(0,1)nseqs:p(0,51)=*(0,6)n:(0,6)array:r(0,50)seq:r(0,43)WriteFastaSq:F(0,6)seq:p(0,43)fp:p(0,1)n:r(0,6)SkipFastaSeq:F(0,43)fp:p(0,1)skip:p(0,6)skip:r(0,6)c:r(0,6)seq:r(0,43)long int:t(0,52)=r(0,52);-2147483648;2147483647;previous:r(0,6)/usr/include/ctype.hseq_util.c/usr/include/ctype.hseq_util.c/usr/include/ctype.hseq_util.cGetFastaSeq:F(0,43)fp:p(0,1)c:r(0,6)seq:(0,43)name:(0,32)desc:(0,32)i:r(0,6)len:(0,6)buflen:(0,6)buffer:(0,29)previous:r(0,30)/usr/include/ctype.hseq_util.c/usr/include/ctype.hseq_util.cRead_fasta_Sq:F(0,43)name:p(0,29)database:p(0,33)offset:p(0,28)offset:r(0,28)sname:(0,32)line:(0,48)seq:(0,43)len:(0,6)n:(0,6)c:r(0,6)current:(0,28)sname:(0,32)line:(0,48)seq:(0,43)len:(0,6)n:(0,6)c:r(0,6)current:(0,28)/usr/include/ctype.hseq_util.c/usr/include/ctype.hseq_util.cRead_nbrf_Sq:F(0,43)name:p(0,29)database:p(0,33)offset:p(0,28)text_offset:p(0,6)offset:r(0,28)sname:(0,32)line:(0,48)seq:(0,43)current:(0,28)len:(0,6)c:r(0,6)sname:(0,32)line:(0,48)seq:(0,43)current:(0,28)len:(0,6)c:r(0,6)FindNext:F(0,28)fp:p(0,1)text:p(0,29)line:p(0,29)line:r(0,29)hash_name:F(0,6)string:p(0,29)n:r(0,6)compile_embl_index:F(0,10)name:p(0,29)buf:(0,32)datafile:r(0,1)indexfile:(0,1)sname:(0,32)c:r(0,6)n:(0,28)offset:r(0,28)state:r(0,6)compile_fasta_index:F(0,10)name:p(0,29)buf:(0,32)datafile:r(0,1)indexfile:(0,1)sname:(0,32)c:r(0,6)n:(0,28)offset:r(0,28)state:r(0,28)compile_nbrf_index:F(0,10)name:p(0,29)buf:(0,32)datafile:(0,1)textfile:(0,1)indexfile:(0,1)name1:(0,32)name2:(0,32)c:(0,28)d:r(0,28)n:(0,28)SeekTo:F(0,28)fp:p(0,1)text:p(0,29)p:(0,28)s:r(0,29)c:r(0,6)FreeSeq:F(0,10)seq:p(0,43)_filenames.2_fp.3_files.4WhichFileOfSequences:F(0,1)filename:p(0,29)filenames:V(0,53)=ar(0,26);0;99;(0,29)fp:V(0,54)=ar(0,26);0;99;(0,1)files:V(0,6)n:r(0,6)nextSeqFrom_list_file:F(0,43)list_file:p(0,1)line:(0,32)seq:(0,32)sq:r(0,43)NextSeq_from_database_spec:F(0,43)spec:p(0,29)wild:(0,32)line:(0,32)name:(0,32)db:(0,33)len:r(0,6)_old_spec.5_old_wild.6_old_db.7IsSequenceSpec:F(0,33)spec:p(0,29)wild:p(0,29)wild:r(0,29)old_spec:V(0,29)old_wild:V(0,29)old_db:V(0,33)buf:(0,32)sname:r(0,29)rewind_spec:F(0,10)spec:p(0,29)buf:(0,32)db:r(0,33)fp:r(0,1)NextSeq:F(0,43)spec_or_file:p(0,29)wild:(0,32)db:r(0,33)fp:r(0,1)_complement_tablecomplement_base:F(0,30)c:p(0,6)x:r(0,6)free_ct:F(0,10)ReverseSeq:F(0,43)dna:p(0,43)s:r(0,29)t:r(0,29)u:r(0,30)reverse_protein_seq:F(0,43)protein:p(0,43)s:r(0,29)t:r(0,29)u:r(0,30)ComplementSeq:F(0,29)seq:p(0,29)s:r(0,29)c:r(0,30)t:r(0,29)SubSeq:F(0,43)seq:p(0,43)start:p(0,6)stop:p(0,6)stop:r(0,6)subs:r(0,43)s:r(0,29)i:r(0,6)reverse:(0,6)DownDase:F(0,29)s:p(0,29)t:r(0,29)UpCase:F(0,29)s:p(0,29)t:r(0,29)/usr/include/ctype.hseq_util.cCleanLine:F(0,29)s:p(0,29)t:r(0,29)_c:r(0,49)t:r(0,29)_c:r(0,49)IubToRegexp:F(0,29)iubstring:p(0,29)len:(0,6)s:r(0,29)t:r(0,29)Iub2Regexp:F(0,29)iubstring:p(0,29)regexp:p(0,29)maxlen:p(0,6)maxlen:(0,6)s:r(0,29)len:(0,6)_iub.8_initialised.9IubRegexp:F(0,29)c:p(0,6)iub:V(0,55)=ar(0,26);0;255;(0,29)initialised:V(0,6)/usr/include/ctype.hseq_util.cGetSeqFrom_file:F(0,43)filename:p(0,29)fp:(0,1)seq:(0,43)name:(0,32)desc:(0,32)buf:(0,56)=ar(0,26);0;100000;(0,30)s:r(0,29)t:(0,29)len:(0,6)_c:r(0,49)_c:r(0,49)SeqDup:F(0,43)seq:p(0,43)dup:r(0,43)IntoSequence:F(0,43)name:p(0,29)desc:p(0,29)s:p(0,29)desc:r(0,29)s:r(0,29)KvCmp:F(0,6)A:p(0,57)=*(0,58)=k(0,10)B:p(0,57)B:r(0,57)KEYVALUE:t(0,59)=(0,60)=s8key:(0,61)=r(0,6);4;0;,0,32;value:(0,6),32,32;;float:t(0,61)ReadFreqTable:F(0,62)=*(0,63)=r(0,6);8;0;double:t(0,63)fp:p(0,1)line:(0,32)c:(0,6)f:(0,63)t:r(0,63)freq:r(0,62)ResidueFrequencies:F(0,62)seq:p(0,43)n:r(0,6)c:r(0,6)freq:r(0,62)t:r(0,63)PseudoResidueFrequencies:F(0,62)seq:p(0,43)pseudo_len:p(0,6)n:r(0,6)c:r(0,6)freq:r(0,62)t:r(0,63)DayhoffResidueFrequencies:F(0,62)freq:r(0,62)c:r(0,6)t:r(0,63)AltschulResidueFrequencies:F(0,62)freq:r(0,62)c:r(0,6)t:r(0,63)RobinsonResidueFrequencies:F(0,62)freq:r(0,62)c:r(0,6)t:r(0,63)GemResidueFrequencies:F(0,62)freq:r(0,62)c:r(0,6)t:r(0,63)ModelResidueFrequencies:F(0,62)model:p(0,29)createSequenceIndex:F(0,64)=*(0,65)=(0,66)=xssequence_index:SEQUENCE_INDEX:t(0,65)sequence_index:T(0,66)=s1028start:(0,67)=ar(0,26);0;255;(0,6),0,8192;offset:(0,51),8192,32;;seq:p(0,43)seqin:r(0,64)c:r(0,6)n:r(0,6)next:(0,67)seqin:r(0,64)c:r(0,6)n:r(0,6)next:(0,67)FreeSequenceIndex:F(0,10)seqin:p(0,64)CopyMatrix:F(0,68)=*(0,51)old_matrix:p(0,68)matrix:(0,68)c:r(0,6)d:r(0,6)/usr/include/ctype.hseq_util.c/usr/include/ctype.hseq_util.c/usr/include/ctype.hseq_util.c/usr/include/ctype.hseq_util.c/usr/include/ctype.hseq_util.cReadBlastMatrix:F(0,68)name:p(0,29)fullname:(0,32)tok:r(0,29)fp:(0,1)line:(0,32)s:r(0,29)matrix:(0,68)row:(0,67)rows:(0,6)c:(0,6)d:r(0,6)n:(0,6)num:(0,6)_c:r(0,49)fullname:(0,32)tok:r(0,29)fp:(0,1)line:(0,32)s:r(0,29)matrix:(0,68)row:(0,67)rows:(0,6)c:(0,6)d:r(0,6)n:(0,6)num:(0,6)up:(0,6)down:r(0,6)_c:r(0,49)temp_name:(0,32)temp_name:(0,32)_is_nuc.10_init.11IsNucleotide:F(0,6)c:p(0,6)is_nuc:V(0,67)init:V(0,6)AdjustMatrix:F(0,68)matrix:p(0,68)new:p(0,68)lambda:p(0,63)freq1:p(0,62)freq2:p(0,62)freq0:p(0,62)scale:p(0,6)lambda:(0,63)logratio1:(0,69)=ar(0,26);0;255;(0,63)logratio2:(0,69)i:r(0,6)j:r(0,6)logratio1:(0,69)logratio2:(0,69)i:r(0,6)j:r(0,6)NewSeq:F(0,43)len:p(0,6)name:p(0,29)seq:r(0,43)databases:S(0,70)=ar(0,26);0;99;(0,33)database_count:S(0,6)complement_table:S(0,29)#1/12 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D&D"D&D"D&D,D1'D4*D1-D20D43D26D49D>D5HDKD5gD6jDmD9sD;~D<D;D<D>D<D>D?D>D?D>D?D@D?D@DB4DDDDETDGgDKoD-zD.DDDDDDDDDDDDDDDDDDDD DDDD!D&D0$  $ ( , 0 4, 8: G Q @[ @e o y  @   @   @ @ @ < @ @     7! $TDP8DTODPQDTWDPZDTbDPfDRiDTmDPrDRxDP|DUDRDUDWDUDWDUDWDUDWDXDWDXDW'DX+DW3DX7DZlD[yDZ|D[D]D[D]D_D]D_DgDb" $P86 PE PO PX P e P(q P,} P0 P4 P8 P P @P @P @P @P P R @S @S @S$ T, W- !. $/ d$8] d hR(t t 3@ @@ ,B9$4_KarlinAltschulStatistics___i686.get_pc_thunk.bx_lambda_func_solve_for_lambda_entropy_H_HSP_length_correction_gem_statistics_get_h_associated_dam_eqn_upper_objective_lower_objective_gapped_theta_iglehart_EmpiricalGEM___i686.get_pc_thunk.axdyld_stub_binding_helper___sF_free_lgamma_calloc_log_fprintf_exp/mnt/gmirror/ports/biology/ariadne/work/SRC-1.3/gaplib.cgcc2_compiled.KarlinAltschulStatistics:F(0,1)=r(0,1);-2147483648;2147483647;int:t(0,1)matrix:p(0,2)=*(0,3)=*(0,1)freq1:p(0,4)=*(0,5)=r(0,1);8;0;freq2:p(0,4)lambda:p(0,4)Kminus:p(0,4)Kplus:p(0,4)H:p(0,4)r:p(0,4)s:p(0,4)double:t(0,5)freq1:r(0,4)freq2:r(0,4)Kplus:r(0,4)H:r(0,4)r:r(0,4)s:r(0,4)h:r(0,4)hmin:(0,1)hmax:(0,1)R1:(0,5)R2:(0,5)R3:(0,5)mean:(0,5)lambda_func:F(0,5)lambda:p(0,5)h:p(0,4)hmin:p(0,1)hmax:p(0,1)h:r(0,4)hmax:r(0,1)c:r(0,1)d:r(0,5)l:(0,5)f:(0,5)solve_for_lambda:F(0,5)h:p(0,4)hmin:p(0,1)hmax:p(0,1)hmin:r(0,1)hmax:r(0,1)left:(0,5)right:(0,5)midpt:(0,5)fleft:(0,5)fright:r(0,5)fmidpt:r(0,5)entropy_H:F(0,5)h:p(0,4)hmin:p(0,1)hmax:p(0,1)lambda:p(0,5)hmax:r(0,1)lambda:r(0,5)i:r(0,1)H:(0,5)l:(0,5)d:r(0,5)HSP_length_correction:F(0,5)H:p(0,5)K:p(0,5)lambda:p(0,5)len1:p(0,1)len2:p(0,1)lambda:(0,5)gem_statistics:F(0,1)gap_start:p(0,5)gap_extend:p(0,5)lambda:p(0,5)s:p(0,5)Kplus:p(0,5)Kminus:p(0,5)alpha:p(0,4)theta1:p(0,4)theta2:p(0,4)K1:p(0,4)K2:p(0,4)gap_extend:(0,5)lambda:r(0,5)s:r(0,5)Kplus:(0,5)Kminus:(0,5)alpha:r(0,4)theta2:r(0,4)get_h:F(0,4)matrix:p(0,2)freq1:p(0,4)freq2:p(0,4)hmin:p(0,3)hmax:p(0,3)mean:p(0,4)m:r(0,1)n:r(0,1)distribution:(0,4)associated_dam_eqn:F(0,5)distribution:p(0,4)min:p(0,1)max:p(0,1)lambda:p(0,5)transient:p(0,6)=*(0,4)cn:p(0,3)lambda:(0,5)transient:r(0,6)f:(0,4)h:(0,6)converged:r(0,4)r:(0,5)t:r(0,1)i:r(0,1)Max:r(0,1)k:(0,1)hi:r(0,1)d:r(0,5)l:r(0,5)upper_objective:F(0,5)alpha:p(0,5)beta:p(0,5)beta:(0,5)lower_objective:F(0,5)alpha:p(0,5)beta:p(0,5)beta:(0,5)gapped_theta:F(0,5)alpha:p(0,5)objective:p(0,7)=*(0,8)=f(0,5)objective:r(0,7)left:(0,5)right:(0,5)midpt:(0,5)fleft:(0,5)fright:r(0,5)fmidpt:r(0,5)iglehart:F(0,9)=(0,9)void:t(0,9)h:p(0,4)hmin:p(0,1)hmax:p(0,1)lambda:p(0,5)xmu:p(0,5)delta:p(0,1)R1:p(0,4)R2:p(0,4)R3:p(0,4)Kplus:p(0,4)Kminus:p(0,4)lambda:(0,5)xmu:(0,5)R2:r(0,4)R3:r(0,4)Xmu:(0,5)ESN:(0,5)EN:(0,5)SN:r(0,5)last_EN:(0,5)last_ESN:(0,5)s:r(0,4)t:(0,4)n:(0,1)k:r(0,1)i:r(0,1)min1:r(0,1)max1:(0,1)d:r(0,5)eld:r(0,5)l:(0,5)s_ptr:(0,4)t_ptr:(0,4)EmpiricalGEM:F(0,5)lambda0:p(0,5)K0:p(0,5)H:p(0,5)alpha:p(0,5)len1:p(0,1)len2:p(0,1)theta:p(0,4)logkappa:p(0,4)score:p(0,5)K0:(0,5)H:(0,5)alpha:r(0,5)len1:r(0,1)len2:r(0,1)logkappa:r(0,4)score:(0,5)alpha2:(0,5)pval:r(0,5)x:r(0,5)f:r(0,5)L:(0,5)#1/12 1199151376 0 0 100644 3596 ` cmp.o8 T__text__TEXTTD __data__DATA__literal4__TEXT__picsymbolstub2__TEXT__la_sym_ptr2__DATA5__textcoal_nt__TEXT9 @  Puu UEU +ÐUEE +ÐUEZE \Zf.w 1f.ÐUEZRE \Zf.w 1f.ÐU1WV}u щM}ƒ!Шt'E1)‰u…!Шuى)ȃ^_]ÐUE D$E$ÐUVMu …!Шuɸt^]Ãt$ $CUE D$E$ÐUEU )Ð3⍀P$Ë $<~rn{ >2.{  z dd<D#D(D)$##-# 6B@#K$D+D0D1(L$+X+a+ j@+s$D3,D87D9:D8BD9MD;\D?ht$3,33 @3$@DAlDFwDGzDFDGDIDM$AlAA @A$DDODWDODWDODWDODWDODWDXDWDXDZDXDZD\D]D_D`$OOO @O!@W+@X5@Y>?!@$tDb$Dg*Dh@A$b$ObXb a@bj$ DmDDrQDtaDzjDvpDywDsyk$mDzmm @m$DD|DD$||| @|$ DDDDD$ @$d+l1K:$[ ,BDTs_icmp_Icmp_fcmp___i686.get_pc_thunk.cx_Fcmp_Rstrcmp_Strcmp_nStrcmp_SStrcmp_uscmp___i686.get_pc_thunk.axdyld_stub_binding_helper_strcmp/mnt/gmirror/ports/biology/ariadne/work/SRC-1.3/cmp.cgcc2_compiled.icmp:F(0,1)=r(0,1);-2147483648;2147483647;int:t(0,1)A:p(0,2)=*(0,3)=k(0,4)=(0,4)B:p(0,2)void:t(0,4)B:r(0,2)Icmp:F(0,1)A:p(0,2)B:p(0,2)B:r(0,2)fcmp:F(0,1)A:p(0,2)B:p(0,2)B:r(0,2)float:t(0,5)=r(0,1);4;0;Fcmp:F(0,1)A:p(0,2)B:p(0,2)B:r(0,2)Rstrcmp:F(0,1)A:p(0,2)B:p(0,2)B:r(0,2)char:t(0,6)=r(0,6);0;127;la:r(0,1)lb:r(0,1)n:r(0,1)Strcmp:F(0,1)A:p(0,2)B:p(0,2)B:r(0,2)nStrcmp:F(0,1)A:p(0,2)B:p(0,2)B:r(0,2)SStrcmp:F(0,1)A:p(0,2)B:p(0,2)B:r(0,2)uscmp:F(0,1)A:p(0,2)B:p(0,2)B:r(0,2)short unsigned int:t(0,7)=@s16;r(0,7);0;65535;#1/20 1199151377 0 0 100644 24292 ` profile_util.o $   __text__TEXT @__data__DATA<__cstring__TEXT @__literal8__TEXT__bss__DATA __picsymbolstub2__TEXT #__la_sym_ptr2__DATAl(__nl_symbol_ptr__DATA06__textcoal_nt__TEXT8 @p*K P)8UWVS\utVED$$D$O1҅t/D$L$$t1ҁ\[^_]D$@$$D$E$D$ $D$ D$D$uiH.WP.KD$@$A D$A$BD$B$ADž1;AUD$ $T$1DžDžэq91;B}w )|D5t)P)9};B|1ADž;A ED$ $D$ D5@t ҋD$ $D$9ЉD5@t ؋P Dž1;B $D$ D$VNjB$ƋB$Q<<;B} q;H[D$@$D$@$XD$$rrD$$;H|D$D$ 5D$L$T$$$UWV1};w|KG$C$9G $.G$#GUzuܺA u;EL;ENEuZE~߃EE9E|ȋED$+E$EƋUER)9U܉U}:MyAM܋M̋уXƃZ~݃EE9E|̋EUE9-X ƃ;E~EM9^ƃ;E~UE4$T$D$YM]ЍΉ$ủ4$EЃL[^_]ÐUWVS\EE …!Ш)PE1ɉE؋TʉE܋XEE@E̋űtTBUԃ,$~$uD$Eй1E 4$щD$ D$1L$aEU D$T$ D$$<Eu t$ D$D$$Et$ D$D$$Et$ D$D$$Et$ D$D$$Eԉt$ D$D$$E@1ɉE̋Űt\uf ~1f~E;}=uvuuuf~uuDf~E;|̃,$~U uЉ|$T$ D$4$4$T}G D$\D$$\1[^_]ÐUWVS\ ED$ D$D$ $aƅ D$$$wED$D$ D$$B BBBB D$$-$FD$$-$FD$1$UT$ L$D$$N ;Pt#Puމt$$P4$^]Ét$$>4$1UWVS<EtGE$,U4$T$ D$ D$ƅ t 1<[^_]D$@$ D$$ Dž}<$~Ӌ|$ DžD$D$$|$ D$D$$|$ D$D$$$|$ D$D$$|$ D$,D$$4|$ D$D$$bD$B$A |$ QD$$T$"D$G$KGUT$ WD$$T$D$G$kwGD$4$Mt$L$ D$$;BDžqD$$A GZ~݃3;x|$pM $EG%s%d %dERROR parsing profile %s, position %d %d : %s PREPROCESS written binary %s READ ERROR in ReadPreProcess() PSI_PROFILE %s/%s.binaryrwXACDEFGHIKLMNPQRSTVWY|=⍀P⍀Pt⍀tP_⍀_PJ⍀JP~5⍀5Pje ⍀ PQL ⍀ P83⍀P⍀P⍀P⍀P⍀P⍀Px⍀xPc⍀cPpkN⍀NPWR9⍀9P>9$⍀$P% ⍀P ⍀P⍀P⍀P⍀P⍀P⍀Pvq|⍀|P] &?Xq 9Rk3Le~$Ë$  3 3 3 3 33x3o3f3]3J38 3/  g@Mz`I 5  \~r\X 'uT=* c>l: \N   w U 3     \ N  <           h L     o }  a T J {8 0 wU3[oPo>o : xi^SI) @ {^   pT5$ eC  7      vxvr m g]_]Y T NDFD@ ; 5+-+' "             |~|x s mcec_ Z TJLJF A ;131- ( "            ~ y sikie ` ZPRPL G A7973 . (    hd`\XTPLHD@<840,($  Jd{d<D'D7D8D>ADonDppD?}D@D?D@DBDDDF#DGBDIaDJ}DMDNDODNDODDDDQDOHDShDUnDSpDUwDVDXDVDXDYDDDDZD[D_*D6D9DOD`^DbsD`DbD`DbDcDdDcDdDeDdDeDfDb DU,DkGDKDJD\D]!$'0<?!'6 C TR qi ({ / 0 1 @2 4 4! @5* @53 4 v5 /? 0J 1V @2a 4i 4q @5z @5 } @ @   V @W  @   @ 6 O > V! @W/ R0 @; R< o= @H oI J K @V W X Vb @Wp q -r -s $0Ds0Dz5Ds7Dz=D}BD~MDWDbDmDtD|D{DzD{Dzt $s0 s @x 5  $xDDDDDDDDDDDD DDDDDD%D>DEDGDJDPDSDUDcDhDnDqDtDyD|DDDDDDDDDDDDDDDDDD $  @ 6Q +b  @@3=GO@X@an@{$lDD"D<DBDIDKDTDVDbDkDuD|DDDDDDDDDDDD7DYD{DDDDDDDDDDDD D D D4 D< De $ @@@< h !$\Dp Du D{ D D D D D D D D D$ D- D6 D? DK DX Do D D D D D D D D D D D D0 DL Di D  D D D  D  "$p BMX@a@j@su    @@@   $pD D D- D. D D D D" D* D8 DF DU DW D` D D D D D7 DY D{ D D D! D D! D  D! D" D# D"D#D"D! D&+D'RD)`D+jD*t$ *5 @KY@b@k@t uv$D0D2D3D4D8D9D:D>D5D6D=w$00@3$hD?DADEDH DJDEDHDI>DJEDqODrQDK\DNvDODPDQDSDQDSDTDUDVBDWgDXDYDZD[D\D].D_AD]ED`HDaXD`_DaeDcyDdDeDfDeDfDeDcDiDj Dk8Dl;$??BC@C@C OBC@C@C\K@L*M8\9F:F;$XDtHDxQDtTDx\DtcDxfDyD}DzD<$tH[tgt y@tv@w\$hDDDDDDDDD%D%D1D9$ @@ @"#+$0@;1<@=$D@DDDFDPDgDsDDDDDDDDDDDDDD>$@R^ lv@@D@@'$D(D0DFDLDNDQDWDYDdDfDkDpDsDuDDDD$( @@0$DDDD$ $$DDDDDDDD DD$1=@FG%H$XI D(D6D@DHDNDVDXDDDDDDDDDDDDDT$(j& y6z@@@H$d(&0H3Xp (@q >(  _Y3{C;s+@_ReadProfile___i686.get_pc_thunk.bx_FreeProfile_PsiLambda_WritePreProcessedProfile_ReadPreProcessedProfile_WriteBinaryProfile_NextProfile_ReadBinaryProfile_GetPreProcessedProfile_PutPreProcessedProfile_SeqToProfile_CheapSeqToProfile_FreeCheapProfile_FreePreProcess_ResidueMapping___i686.get_pc_thunk.axdyld_stub_binding_helper___sF__DefaultRuneLocale_strchr_fclose_fopen_ftell_ungetc_fgetc_feof_sprintf_malloc_fread_fwrite_solve_for_lambda_ResidueFrequencies_free___toupper___tolower_exit_fprintf_strtol___maskrune_strdup_calloc_sscanf_fgets/mnt/gmirror/ports/biology/ariadne/work/SRC-1.3/profile_util.cgcc2_compiled./usr/include/ctype.hprofile_util.c/usr/include/ctype.hprofile_util.c/usr/include/ctype.hprofile_util.cReadProfile:F(0,1)=*(0,2)=(0,3)=xsprofile:PROFILE:t(0,2)profile:T(0,3)=s64name:(0,4)=*(0,5)=r(0,5);0;127;,0,32;length:(0,6)=r(0,6);-2147483648;2147483647;,32,32;width:(0,6),64,32;seq:(0,4),96,32;residue:(0,4),128,32;profile:(0,7)=*(0,8)=*(0,6),160,32;max_score:(0,6),192,32;K:(0,9)=r(0,6);8;0;,224,64;L:(0,9),288,64;H:(0,9),352,64;s:(0,9),416,64;pre:(0,10)=*(0,11)=(0,12)=s36mapping:(0,8),0,32;hitlist:(0,13)=*(0,14)=*(0,15)=(0,16)=s8pos:(0,6),0,32;score:(0,6),32,32;;,32,32;hits:(0,8),64,32;total:(0,6),96,32;threshold:(0,6),128,32;diag_threshold:(0,6),160,32;max_dist:(0,6),192,32;window:(0,6),224,32;psi:(0,17)=*(0,3),256,32;;,480,32;;char:t(0,5)int:t(0,6)double:t(0,9)PREPROCESS:t(0,11)WORD_HIT:t(0,15)fp:p(0,18)=*(0,19)=(0,20)=xs__sFILE:FILE:t(0,19)__sFILE:T(0,20)=s88_p:(0,21)=*(0,22)=@s8;r(0,22);0;255;,0,32;_r:(0,6),32,32;_w:(0,6),64,32;_flags:(0,23)=@s16;r(0,23);-32768;32767;,96,16;_file:(0,23),112,16;_bf:(0,24)=xs__sbuf:,128,64;_lbfsize:(0,6),192,32;_cookie:(0,25)=*(0,26)=(0,26),224,32;_close:(0,27)=*(0,28)=f(0,6),256,32;_read:(0,29)=*(0,30)=f(0,6),288,32;_seek:(0,31)=*(0,32)=f(0,33)=(0,34)=(0,35)=(0,36)=@s64;r(0,36);01000000000000000000000;0777777777777777777777;,320,32;_write:(0,37)=*(0,38)=f(0,6),352,32;_ub:(0,24),384,64;_extra:(0,39)=*(0,40)=xs__sFILEX:,448,32;_ur:(0,6),480,32;_ubuf:(0,41)=ar(0,42)=r(0,42);0000000000000;0037777777777;;0;2;(0,22),512,24;_nbuf:(0,43)=ar(0,42);0;0;(0,22),536,8;_lb:(0,24),544,64;_blksize:(0,6),608,32;_offset:(0,33),640,64;;unsigned char:t(0,22)short int:t(0,23)__sbuf:T(0,24)=s8_base:(0,21),0,32;_size:(0,6),32,32;;void:t(0,26)fpos_t:t(0,33)__darwin_off_t:t(0,34)__int64_t:t(0,35)long long int:t(0,36)long unsigned int:t(0,44)=r(0,44);0000000000000;0037777777777;psi:(0,1)buf:(0,45)=ar(0,42);0;255;(0,5)name:(0,45)len:r(0,6)i:(0,6)j:(0,6)l:r(0,6)u:r(0,6)psi:(0,1)buf:(0,45)name:(0,45)len:r(0,6)i:(0,6)j:(0,6)l:r(0,6)u:r(0,6)_c:r(0,46)=(0,6)__darwin_ct_rune_t:t(0,46)ptr:(0,4)value:r(0,47)=r(0,47);-2147483648;2147483647;long int:t(0,47)_c:r(0,46)_c:r(0,46)ptr:(0,4)value:r(0,47)_c:r(0,46)_c:r(0,46)_c:r(0,46)ptr:(0,4)value:r(0,47)FreeProfile:F(0,26)psi:p(0,1)i:r(0,6)PsiLambda:F(0,9)psi:p(0,1)protein:p(0,48)=*(0,49)=(0,50)=s20name:(0,4),0,32;database:(0,51)=*(0,52)=(0,53)=s32database:(0,4),0,32;type:(0,54)=(0,55)=eEMBL:0,NBRF:1,FASTA:2,SINGLE:3,;,32,32;sequences:(0,6),64,32;length:(0,44),96,32;datafile:(0,18),128,32;textfile:(0,18),160,32;indexfile:(0,18),192,32;index:(0,56)=*(0,57)=*(0,58)=(0,59)=xshash_list:,224,32;;,32,32;desc:(0,4),64,32;len:(0,6),96,32;s:(0,4),128,32;;SEQUENCE:t(0,49)DATABASE:t(0,52)WHAT_KIND_OF_DATABASE:t(0,54) :T(0,55)HASH_LIST:t(0,58)hash_list:T(0,59)=s16name:(0,4),0,32;offset:(0,44),32,32;text_offset:(0,44),64,32;next:(0,60)=*(0,59),96,32;;protein:r(0,48)histogram:r(0,61)=*(0,9)min:(0,6)max:(0,6)n:(0,6)m:r(0,6)s:r(0,6)lambda:(0,9)total:r(0,9)comp:(0,61)WritePreProcessedProfile:F(0,6)pre:p(0,10)fp:p(0,18)temp:(0,62)=ar(0,42);0;11;(0,5)i:r(0,6)j:r(0,6)k:r(0,6)buffer:(0,63)=*(0,23)buflen:(0,6)ReadPreProcessedProfile:F(0,10)fp:p(0,18)buf:(0,45)i:r(0,6)j:r(0,6)k:r(0,6)buffer:(0,63)buflen:(0,6)header:(0,64)=ar(0,42);0;5;(0,6)pre:(0,10)buf:(0,45)i:r(0,6)j:r(0,6)k:r(0,6)buffer:(0,63)buflen:(0,6)header:(0,64)WriteBinaryProfile:F(0,6)psi:p(0,1)fp:p(0,18)buf:(0,45)buffer:(0,63)i:r(0,6)j:r(0,6)k:r(0,6)NextProfile:F(0,1)fp:p(0,18)c:r(0,6)ReadBinaryProfile:F(0,1)fp:p(0,18)buf:(0,45)i:(0,6)k:r(0,6)c:r(0,6)buf:(0,45)i:(0,6)k:r(0,6)c:r(0,6)psi:(0,1)buflen:r(0,6)buffer:(0,63)GetPreProcessedProfile:F(0,10)name:p(0,4)binary_dir:p(0,4)binary_dir:r(0,4)path:(0,45)fp:r(0,18)PutPreProcessedProfile:F(0,6)pre:p(0,10)name:p(0,4)binary_dir:p(0,4)name:r(0,4)binary_dir:r(0,4)path:(0,45)fp:r(0,18)path:(0,45)fp:r(0,18)SeqToProfile:F(0,1)seq:p(0,48)matrix:p(0,7)psi:(0,1)n:r(0,6)m:r(0,6)psi:(0,1)n:r(0,6)m:r(0,6)CheapSeqToProfile:F(0,1)seq:p(0,48)matrix:p(0,7)psi:r(0,1)n:r(0,6)FreeCheapProfile:F(0,26)cheap:p(0,1)FreePreProcess:F(0,26)pre:p(0,10)i:r(0,6)_mapping.0ResidueMapping:F(0,8)mapping:V(0,8)n:r(0,6)m:r(0,6)residues:(0,65)=ar(0,42);0;21;(0,5)X:r(0,6)#1/20 1199151376 0 0 100644 5388 ` profile_stat.o| __text__TEXT__data__DATA__literal4__TEXT__literal8__TEXT__picsymbolstub2__TEXT*__la_sym_ptr2__DATA_d__textcoal_nt__TEXT{ @@ P}}UE]D$E܉uD$ E؉}D$E }D$E$mƍf.Ev'E܉4$D$E؉D$+ɋEw؋E؍Ɖ$1]u}]ËE\$ 4$D$E؉D$EZ|$,ED$D$D$0EЉD$(EȉD$$ED$ EE܉4$D$ED$ D$SM^E^EE$E EE؍Ɖ$+UW1VSWp$Ë$wmi R fE=  ~ y ske ` ZhRhL G AO9O3 . (6 6    }}d d<D&D9 D& D9D&D9D&%D9(D&/D92D:CDQ{DRDUD<D>D@DA!DC0DD<DFHDIV*$&p{&& &&&&& &$</=I!\m@&y@&@&@&@&@4556667`$`DW`D_dDWfD[pD]sD[{D\D]D_D`DaDbDcDdD`D_DhDjDhDjDhDj DkDl Dk1Dl4Dk9Dl<DkADjCDnKDo\DnmDrtDs{DrDsDrDv$W`WW WW)W5@Y>@YG@YPZXdYZ$HDxDzD~DD~DD[$xwx@z{{@|$\d:`CY"q_KarlinAltschulProfileStatistics___i686.get_pc_thunk.bx_GetPsiH_SetDefaultParameters___i686.get_pc_thunk.axdyld_stub_binding_helper_RobinsonResidueFrequencies_calloc_free_iglehart_entropy_H_solve_for_lambda/mnt/gmirror/ports/biology/ariadne/work/SRC-1.3/profile_stat.cgcc2_compiled.KarlinAltschulProfileStatistics:F(0,1)=r(0,1);-2147483648;2147483647;int:t(0,1)psi:p(0,2)=*(0,3)=(0,4)=xsprofile:freq:p(0,5)=*(0,6)=r(0,1);8;0;lambda:p(0,5)Kminus:p(0,5)Kplus:p(0,5)H:p(0,5)r:p(0,5)s:p(0,5)PROFILE:t(0,3)profile:T(0,4)=s64name:(0,7)=*(0,8)=r(0,8);0;127;,0,32;length:(0,1),32,32;width:(0,1),64,32;seq:(0,7),96,32;residue:(0,7),128,32;profile:(0,9)=*(0,10)=*(0,1),160,32;max_score:(0,1),192,32;K:(0,6),224,64;L:(0,6),288,64;H:(0,6),352,64;s:(0,6),416,64;pre:(0,11)=*(0,12)=(0,13)=s36mapping:(0,10),0,32;hitlist:(0,14)=*(0,15)=*(0,16)=(0,17)=s8pos:(0,1),0,32;score:(0,1),32,32;;,32,32;hits:(0,10),64,32;total:(0,1),96,32;threshold:(0,1),128,32;diag_threshold:(0,1),160,32;max_dist:(0,1),192,32;window:(0,1),224,32;psi:(0,18)=*(0,4),256,32;;,480,32;;double:t(0,6)char:t(0,8)PREPROCESS:t(0,12)WORD_HIT:t(0,16)freq:r(0,5)Kplus:r(0,5)H:r(0,5)r:r(0,5)s:r(0,5)h:r(0,5)hmin:(0,1)hmax:(0,1)R1:(0,6)R2:(0,6)R3:(0,6)mean:(0,6)GetPsiH:F(0,5)psi:p(0,2)freq:p(0,5)hmin:p(0,10)hmax:p(0,10)mean:p(0,5)i:r(0,1)j:r(0,1)n:r(0,1)h:(0,5)SetDefaultParameters:F(0,1)psi:p(0,2)freq:r(0,5)Kplus:(0,6)r:(0,6)status:r(0,1) #1/20 1199151377 0 0 100644 19524 ` prospero_utils.o ` ` __text__TEXTX T__data__DATAXx__cstring__TEXT`__literal4__TEXT0__literal8__TEXT8__picsymbolstub2__TEXT0P <__la_sym_ptr2__DATA*(J  __nl_symbol_ptr__DATATt__textcoal_nt__TEXTXx @7H P PUWVpE UM@EER EuU1ЋI4$)‹EMԉUD$1)‰UU4$D$E4$D$EUrED$4$kMD$4$RUD$4$9MxuF$EEUE܋M܋D1EЉuEtủ4UuTUȉU ;}BEM܋uU܋DuM DUE9L1H։M̋EDMЉEEDME9ȉMEąHƋủ9ЉENʋuEtDu9OȅEЉ ;M~M؃;}UEM9Mu$ U$ M$ xȉ$ E$| E$n E؃p^_]ËUeUWV`E UMpR EUי1EE)EEIU1ЃM)D$<$UU" D$<$E D$<$E U9UEED$<$ EU9UEEU9UMM A19-uUMDUDu49:ExŰMUD MuŰuEU ETƋED91xM֋ULE 4E;u uEU EЋRUU EEċEDUĉED9| E~)MU4UM ;u~ u܋u}ԉu؋U B9EM9MuU؋MEԉt$ T$ $D$ ƋUE D$ T$M4$D$ E EE9E|IE$ E$ E$ E$ EU܉`^_]ËUM$m UM$Y UM$E UM$1 EE9E|V1.RUMƋL4E.űUuD D$4$ MUEM9|'D$4$ MUD$4$ MUD$4$ MUEM9|UWV EU} ut#Eu݋ED$ $ MEEU} ut.I E4|Tt8t#tu܋E ^_]ËUTUTҋUTPUT=M(UWVS9UEELR8HUpPD$XEDE D$PEEċ}EG\+EMEE 9M|ˋuM܋EԋVE9MUi$%u1EUMuEU܋u<}ԋM9ЉENЃ9։UM}lUEUM.UD5MUD5E;u|MUuԋ$|$D$Ẻt$ED$ ED$.EEMuD$ EL$t$$ UMuЋUL$D$Eȉt$E$D$ ED$uME܉}ԃ9ƉuMỦ$Mȉ $uĉ4$D$$:D$$#UM̋u܋B E-U űE0-GU؋Mu܈E MűQ U܈2WM؋u M܈11u؀<2X$tE MQ $U؉ƋG$x9t1E7OPE : ɋMNЈM|UW1VS*YE$E]YEEMYMEM$]-ME5\^f.w{>*YE$|*]EEMYEYM$MM-]ME5\^f.E t$ |$D$EM$U<E8ME8E0\[^_]> %d %s len %d from %d to %d vs %s len %d from %d to %d score %d eval %e identity %.2f%% K %e L %e H %e alpha %e %5d %-.60s %5d %s %5s %-.60s %5d %-.60s %5d %s B-C6???⍀P⍀P⍀P⍀Plg⍀PSN⍀P:5w⍀wP!b⍀bPM⍀MP8⍀8P=Vo$Ë$1 (    ( q  h <     9 l 9 5    "       b  T T ~ x r u` }aEnI;-Cm_Q?.pZ NN  JJ  FF  BB  >>~ y s:k:e ` Z6R6L G A2g92g3 . 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D3 DS DV Df D D D D D D D D D D D- DB DI DT D^ Dq D| D D D D D D D [$  $,4< DL$T6@C@P@_@o@y@@@@@@@@(34<@HS@\ ]@n@  @   @@ @  @ 6 6 * * $pD, D0 D2 D< DC DJ DS D] Dh D D D D D D $,  +9E@N0 OW X Y Z$D D D D D D D D' D* D D D D D D D  D  D D D D  D D:DFDKDP[$   (08<@@@%@/@9@C DXE$pFdX y, C1 Xa \ ( _SWScoreProteinToProfile_AlignProteinToProfile_ProteinBacktrack_PrintProteinProfileAlignment___i686.get_pc_thunk.bx_PercentIdentity_IterativelyIncreaseGapPenalty___i686.get_pc_thunk.axdyld_stub_binding_helper__DefaultRuneLocale_exp___maskrune___toupper_fputc_fprintf_free_UpCase_calloc/mnt/gmirror/ports/biology/ariadne/work/SRC-1.3/prospero_utils.cgcc2_compiled.SWScoreProteinToProfile:F(0,1)=r(0,1);-2147483648;2147483647;int:t(0,1)protein:p(0,2)=*(0,3)=(0,4)=s20name:(0,5)=*(0,6)=r(0,6);0;127;,0,32;database:(0,7)=*(0,8)=(0,9)=s32database:(0,5),0,32;type:(0,10)=(0,11)=eEMBL:0,NBRF:1,FASTA:2,SINGLE:3,;,32,32;sequences:(0,1),64,32;length:(0,12)=r(0,12);0000000000000;0037777777777;,96,32;datafile:(0,13)=*(0,14)=(0,15)=xs__sFILE:,128,32;textfile:(0,13),160,32;indexfile:(0,13),192,32;index:(0,16)=*(0,17)=*(0,18)=(0,19)=xshash_list:,224,32;;,32,32;desc:(0,5),64,32;len:(0,1),96,32;s:(0,5),128,32;;pro:p(0,20)=*(0,21)=(0,22)=xsprofile:pro_start:p(0,1)pro_extend:p(0,1)SEQUENCE:t(0,3)char:t(0,6)DATABASE:t(0,8)WHAT_KIND_OF_DATABASE:t(0,10) :T(0,11)long unsigned int:t(0,12)FILE:t(0,14)__sFILE:T(0,15)=s88_p:(0,23)=*(0,24)=@s8;r(0,24);0;255;,0,32;_r:(0,1),32,32;_w:(0,1),64,32;_flags:(0,25)=@s16;r(0,25);-32768;32767;,96,16;_file:(0,25),112,16;_bf:(0,26)=xs__sbuf:,128,64;_lbfsize:(0,1),192,32;_cookie:(0,27)=*(0,28)=(0,28),224,32;_close:(0,29)=*(0,30)=f(0,1),256,32;_read:(0,31)=*(0,32)=f(0,1),288,32;_seek:(0,33)=*(0,34)=f(0,35)=(0,36)=(0,37)=(0,38)=@s64;r(0,38);01000000000000000000000;0777777777777777777777;,320,32;_write:(0,39)=*(0,40)=f(0,1),352,32;_ub:(0,26),384,64;_extra:(0,41)=*(0,42)=xs__sFILEX:,448,32;_ur:(0,1),480,32;_ubuf:(0,43)=ar(0,44)=r(0,44);0000000000000;0037777777777;;0;2;(0,24),512,24;_nbuf:(0,45)=ar(0,44);0;0;(0,24),536,8;_lb:(0,26),544,64;_blksize:(0,1),608,32;_offset:(0,35),640,64;;HASH_LIST:t(0,18)hash_list:T(0,19)=s16name:(0,5),0,32;offset:(0,12),32,32;text_offset:(0,12),64,32;next:(0,46)=*(0,19),96,32;;PROFILE:t(0,21)profile:T(0,22)=s64name:(0,5),0,32;length:(0,1),32,32;width:(0,1),64,32;seq:(0,5),96,32;residue:(0,5),128,32;profile:(0,47)=*(0,48)=*(0,1),160,32;max_score:(0,1),192,32;K:(0,49)=r(0,1);8;0;,224,64;L:(0,49),288,64;H:(0,49),352,64;s:(0,49),416,64;pre:(0,50)=*(0,51)=(0,52)=s36mapping:(0,48),0,32;hitlist:(0,53)=*(0,54)=*(0,55)=(0,56)=s8pos:(0,1),0,32;score:(0,1),32,32;;,32,32;hits:(0,48),64,32;total:(0,1),96,32;threshold:(0,1),128,32;diag_threshold:(0,1),160,32;max_dist:(0,1),192,32;window:(0,1),224,32;psi:(0,57)=*(0,22),256,32;;,480,32;;unsigned char:t(0,24)short int:t(0,25)__sbuf:T(0,26)=s8_base:(0,23),0,32;_size:(0,1),32,32;;void:t(0,28)fpos_t:t(0,35)__darwin_off_t:t(0,36)__int64_t:t(0,37)long long int:t(0,38)double:t(0,49)PREPROCESS:t(0,51)WORD_HIT:t(0,55)S:(0,47)H:(0,47)V:(0,47)M:(0,48)plen:(0,1)len:(0,1)i:r(0,1)j:(0,1)score:(0,1)seq:(0,5)h:r(0,1)h1:r(0,1)h2:r(0,1)v:r(0,1)v1:(0,1)v2:(0,1)d:r(0,1)s:r(0,1)S:(0,47)H:(0,47)V:(0,47)M:(0,48)plen:(0,1)len:(0,1)i:r(0,1)j:(0,1)score:(0,1)seq:(0,5)h:r(0,1)h1:r(0,1)h2:r(0,1)v:r(0,1)v1:(0,1)v2:(0,1)d:r(0,1)s:r(0,1)AlignProteinToProfile:F(0,58)=*(0,59)=(0,60)=s12pos1:(0,1),0,32;pos2:(0,1),32,32;type:(0,1),64,32;;PROFILE_ALIGNMENT:t(0,59)protein:p(0,2)pro:p(0,20)gap_start:p(0,1)gap_extend:p(0,1)score:p(0,48)length:p(0,48)percent:p(0,61)=*(0,49)score:r(0,48)percent:r(0,61)S:(0,47)H:(0,47)V:(0,47)path:(0,62)=*(0,63)=*(0,64)=r(0,64);0000000000000;0037777777777;unsigned int:t(0,64)plen:r(0,1)len:(0,1)len2:r(0,1)i:(0,1)j:r(0,1)max:(0,1)I:(0,1)J:(0,1)align:r(0,58)seq:(0,5)h:(0,1)h1:r(0,1)h2:r(0,1)v:r(0,1)v1:r(0,1)v2:r(0,1)d:r(0,1)p:(0,1)s:r(0,1)S:(0,47)H:(0,47)V:(0,47)path:(0,62)plen:r(0,1)len:(0,1)len2:r(0,1)i:(0,1)j:r(0,1)max:(0,1)I:(0,1)J:(0,1)align:r(0,58)seq:(0,5)h:(0,1)h1:r(0,1)h2:r(0,1)v:r(0,1)v1:r(0,1)v2:r(0,1)d:r(0,1)p:(0,1)s:r(0,1)ProteinBacktrack:F(0,58)path:p(0,62)I:p(0,1)J:p(0,1)length:p(0,48)length:r(0,48)i:r(0,1)j:r(0,1)len:(0,1)align:(0,58)p:r(0,64)i:r(0,1)j:r(0,1)len:(0,1)align:(0,58)p:r(0,64)/usr/include/ctype.hprospero_utils.c/usr/include/ctype.hprospero_utils.cPrintProteinProfileAlignment:F(0,28)fp:p(0,13)count:p(0,1)pro:p(0,20)protein:p(0,2)align:p(0,58)len:p(0,1)score:p(0,1)evalue:p(0,49)percent:p(0,49)K:p(0,49)L:p(0,49)H:p(0,49)alpha:p(0,49)show_align:p(0,1)count:r(0,1)score:r(0,1)evalue:r(0,49)percent:r(0,49)K:r(0,49)L:r(0,49)H:r(0,49)alpha:r(0,49)start1:r(0,1)start2:r(0,1)stop1:r(0,1)stop2:r(0,1)n:(0,1)pos:(0,1)buflen:r(0,1)seq:(0,5)off1:(0,1)off2:(0,1)buf1:(0,5)buf2:(0,5)buf3:(0,5)m:(0,1)end1:r(0,1)end2:(0,1)i:r(0,1)_c:r(0,65)=(0,1)__darwin_ct_rune_t:t(0,65)_c:r(0,65)m:(0,1)end1:r(0,1)end2:(0,1)i:r(0,1)_c:r(0,65)_c:r(0,65)PercentIdentity:F(0,49)align:p(0,58)length:p(0,1)seq:p(0,2)pro:p(0,20)matches:(0,1)diags:(0,1)i:r(0,1)p:(0,1)IterativelyIncreaseGapPenalty:F(0,28)seq:p(0,2)pro:p(0,20)A:p(0,48)B:p(0,48)lambda0:p(0,49)K0:p(0,49)H:p(0,49)s:p(0,49)alpha:p(0,61)sw_score:p(0,48)pro:r(0,20)alpha:r(0,61)sw_score:r(0,48)a:r(0,49)A1:r(0,1)B1:r(0,1)#1/20 1199151377 0 0 100644 11140 ` topalign.o8  T __text__TEXTTd $__data__DATA0  __picsymbolstub2__TEXT4 <__la_sym_ptr2__DATA(. l  __nl_symbol_ptr__DATA X __textcoal_nt__TEXT \ @`  P   UWVS,EE(ɋE ]E0]]E8E@]]UpR EUי1ЋM)‹EIUM1D$<$)ƒUUCD$<$E-D$<$EEU9UED$<$EU9UEGD$lj$D$E<$EU9UEEUE9U<M}D@UM$=E$~}x1;xUPLHM}UD}DM 9Džtxt@G M}t}EU ETNjED9z1x׋@LEU <Džp;ttDžpM UEI   ,ED,D9| DžpMU<@p pcDAu"EPEHLPD9x }x Mp;xCE}@D9}UD$D$ E$D$$ M}؃XDž|TX\|UTXE*D2 L$,|$(D$0U EɋBMD$$A \$\$EED$ $\$ݝ`Ev`f.EErE9|EԋUMD$ D2D$2 $D$UNjE T$D$ Eԉ<$D$eE$ݝh7ݝ0EE0E\$DYM\$<YE݅h݅`D$4L$,\$$\$UD$LMD2 |\D$EԃD$E L$ D$$|$t$<$i|\EM9M|bE$AE$3E$%E$E$ }<$|,[^_]Ë}U$M$U$M$U$M9ω}|4DDELDADEHq1.@NjL|Džt.t@B E @x}D$4$M}EM9|D$4$~MUEM9|D$4$PMUD$4$4MUD$4$MUEM9|UE U@ +B ⍀P⍀P⍀P⍀P⍀P⍀Pw⍀wPqlb⍀bPXSM⍀MP?:8⍀8P&8Qj$Ë$åm?J6%sk<  gz        {{  bb~ y sIkIe ` Z0R0L G A93 . (    $  d!d,<D%D8D%D98D8;D9>DBAD9DD:GDBID=LD:ODBRDCTD=WDBZDC]D=^DCaDHcDCnD8pDDsDCvDHyDIDHDIDJDIDJDIDJDKDJDKDJDKDQDRDQDRDQDRDVDWDV DW DXDWDX!DW$DX'D_-D[7D_>D`YDakDbDhDiDhDiDkDlDoDpD{DDDDD"D*D0D2DKDND`D`DfDpDDDDDDDDDDD1DADDDNDbVD_eDDDDDDDDDFDdDDDDDDDDoDwDDDDD@DCDND]DDDDDDDtDwDxDYDX!DS3DRODLaDM}DNDK;$%z$X$ ~%%%%%$%(%0%8%@ 6)+9 Wa{^p<  $ 6 m z T q ( !  % % % %# %0 19 2B 3K 4Y 5 % 6 7P e @8q 9{ @: ; @; = >| > ax _ dt @d @d @d @d @d @d dp @d  V e  @q  h `    1 2 3 4 5 67@8'91@:=;E@;N=X>|cdaxocpdtx@d@d@d@d@d@ddp@dc$DDD$ @$d3>  {ouV_TopAlignProteinToProfile___i686.get_pc_thunk.bx_IslandCmp___i686.get_pc_thunk.axdyld_stub_binding_helper___sF_free_PrintProteinProfileAlignment_exp_PercentIdentity_ProteinBacktrack_EmpiricalGEM_putchar_qsort_toupper_calloc/mnt/gmirror/ports/biology/ariadne/work/SRC-1.3/topalign.cgcc2_compiled.TopAlignProteinToProfile:F(0,1)=r(0,1);-2147483648;2147483647;int:t(0,1)protein:p(0,2)=*(0,3)=(0,4)=s20name:(0,5)=*(0,6)=r(0,6);0;127;,0,32;database:(0,7)=*(0,8)=(0,9)=s32database:(0,5),0,32;type:(0,10)=(0,11)=eEMBL:0,NBRF:1,FASTA:2,SINGLE:3,;,32,32;sequences:(0,1),64,32;length:(0,12)=r(0,12);0000000000000;0037777777777;,96,32;datafile:(0,13)=*(0,14)=(0,15)=xs__sFILE:,128,32;textfile:(0,13),160,32;indexfile:(0,13),192,32;index:(0,16)=*(0,17)=*(0,18)=(0,19)=xshash_list:,224,32;;,32,32;desc:(0,5),64,32;len:(0,1),96,32;s:(0,5),128,32;;pro:p(0,20)=*(0,21)=(0,22)=xsprofile:gap_start:p(0,1)gap_extend:p(0,1)top:p(0,1)ethresh:p(0,23)=r(0,1);8;0;self:p(0,1)lambda0:p(0,23)K0:p(0,23)entropy:p(0,23)alpha:p(0,23)SEQUENCE:t(0,3)char:t(0,6)DATABASE:t(0,8)WHAT_KIND_OF_DATABASE:t(0,10) :T(0,11)long unsigned int:t(0,12)FILE:t(0,14)__sFILE:T(0,15)=s88_p:(0,24)=*(0,25)=@s8;r(0,25);0;255;,0,32;_r:(0,1),32,32;_w:(0,1),64,32;_flags:(0,26)=@s16;r(0,26);-32768;32767;,96,16;_file:(0,26),112,16;_bf:(0,27)=xs__sbuf:,128,64;_lbfsize:(0,1),192,32;_cookie:(0,28)=*(0,29)=(0,29),224,32;_close:(0,30)=*(0,31)=f(0,1),256,32;_read:(0,32)=*(0,33)=f(0,1),288,32;_seek:(0,34)=*(0,35)=f(0,36)=(0,37)=(0,38)=(0,39)=@s64;r(0,39);01000000000000000000000;0777777777777777777777;,320,32;_write:(0,40)=*(0,41)=f(0,1),352,32;_ub:(0,27),384,64;_extra:(0,42)=*(0,43)=xs__sFILEX:,448,32;_ur:(0,1),480,32;_ubuf:(0,44)=ar(0,45)=r(0,45);0000000000000;0037777777777;;0;2;(0,25),512,24;_nbuf:(0,46)=ar(0,45);0;0;(0,25),536,8;_lb:(0,27),544,64;_blksize:(0,1),608,32;_offset:(0,36),640,64;;HASH_LIST:t(0,18)hash_list:T(0,19)=s16name:(0,5),0,32;offset:(0,12),32,32;text_offset:(0,12),64,32;next:(0,47)=*(0,19),96,32;;PROFILE:t(0,21)profile:T(0,22)=s64name:(0,5),0,32;length:(0,1),32,32;width:(0,1),64,32;seq:(0,5),96,32;residue:(0,5),128,32;profile:(0,48)=*(0,49)=*(0,1),160,32;max_score:(0,1),192,32;K:(0,23),224,64;L:(0,23),288,64;H:(0,23),352,64;s:(0,23),416,64;pre:(0,50)=*(0,51)=(0,52)=s36mapping:(0,49),0,32;hitlist:(0,53)=*(0,54)=*(0,55)=(0,56)=s8pos:(0,1),0,32;score:(0,1),32,32;;,32,32;hits:(0,49),64,32;total:(0,1),96,32;threshold:(0,1),128,32;diag_threshold:(0,1),160,32;max_dist:(0,1),192,32;window:(0,1),224,32;psi:(0,57)=*(0,22),256,32;;,480,32;;double:t(0,23)unsigned char:t(0,25)short int:t(0,26)__sbuf:T(0,27)=s8_base:(0,24),0,32;_size:(0,1),32,32;;void:t(0,29)fpos_t:t(0,36)__darwin_off_t:t(0,37)__int64_t:t(0,38)long long int:t(0,39)PREPROCESS:t(0,51)WORD_HIT:t(0,55)ethresh:(0,23)lambda0:(0,23)K0:(0,23)entropy:(0,23)alpha:(0,23)S:(0,48)H:(0,48)V:(0,48)islands:(0,1)island:(0,58)=*(0,59)=(0,60)=xsisland_struct:ISLAND:t(0,59)island_struct:T(0,60)=s16i:(0,1),0,32;j:(0,1),32,32;id:(0,1),64,32;score:(0,1),96,32;;island_ptr:(0,61)=*(0,62)=*(0,58)path:(0,63)=*(0,64)=*(0,65)=r(0,65);0000000000000;0037777777777;unsigned int:t(0,65)plen:r(0,1)len:(0,1)len2:r(0,1)i:(0,1)j:r(0,1)seq:(0,5)hits:(0,1)jmax:(0,1)h:(0,1)h1:r(0,1)h2:r(0,1)v:r(0,1)v1:r(0,1)v2:r(0,1)d:r(0,1)p:(0,1)s:r(0,1)length:(0,1)align:r(0,66)=*(0,67)=(0,68)=s12pos1:(0,1),0,32;pos2:(0,1),32,32;type:(0,1),64,32;;PROFILE_ALIGNMENT:t(0,67)percent:(0,23)theta:(0,23)logkappa:(0,23)pval:(0,23)S:(0,48)H:(0,48)V:(0,48)islands:(0,1)island:(0,58)island_ptr:(0,61)path:(0,63)plen:r(0,1)len:(0,1)len2:r(0,1)i:(0,1)j:r(0,1)seq:(0,5)hits:(0,1)jmax:(0,1)h:(0,1)h1:r(0,1)h2:r(0,1)v:r(0,1)v1:r(0,1)v2:r(0,1)d:r(0,1)p:(0,1)s:r(0,1)IslandCmp:F(0,1)a:p(0,69)=*(0,70)=k(0,29)b:p(0,69)b:r(0,69)