######################################################### # Parmfile for Migrate 0.9.10 # generated automatically on # 11/03/00 21:40:41 # # please report problems to Peter beerli # email: beerli@genetics.washington.edu # http://evolution.genetics.washington.edu/lamarc.html ######################################################### # General options --------------------------------------- nmlength=10 # data options ------------------------------------------ datatype=SequenceData # Sequence data options------------ ttratio=2.000000 freqs-from-data=YES categories=1 rates=1:1.000000 prob-rates=1:1.000000 autocorrelation=NO weights=NO interleaved=NO usertree=NO distfile=NO # input/output options ---------------------------------- menu=NO # input formats infile=infile.benchmark random-seed=243329109 # output formats progress=YES logfile=NONE print-data=NO outfile=outfile.benchmark plot=NO profile=ALL:PRECISE print-tree=NONE mathfile=mathfile write-summary=NO # likelihood-ratio test # parameter options ------------------------------------ theta=FST migration=FST mutation=NOGAMMA fst-type=THETA custom-migration={*********} # search strategies ------------------------------------ short-chains=10 short-inc=20 short-sample=500 long-chains=3 long-inc=20 long-sample=5000 #obscure options burn-in=10000 heating=NO moving-steps=NO long-chain-epsilon=1000.000000 gelman-convergence=No replicate=Yes:LastChains end