molecule m; float x[7500], f[7500], v[7500]; float dgrad, fret, time; int ier, mytaskid, rank, size; mytaskid = mpiinit( argc, argv, rank, size ); m = getpdb("mb.pdb"); readparm(m, "mb.prmtop"); mm_options( "nsnb=10, ntpr=20, ntpr_md=20, gb=1, kappa=0.14701, cut=20.0, diel=C, rgbmax=15., rattle=1, tautp=999999."); mme_init( m, NULL, "::Z", x, NULL); getxv( "mb.inpcrd", m.natoms, time, x, v ); md(3*m.natoms, 100, x, f, v, mme ); mme_timer(); mpifinalize();