from Bio.config.FormatRegistry import FormatObject, FormatGroup search = FormatGroup( name = "search", multirecord = 0, ) blast = FormatGroup( name = "blast", filter = "Bio.expressions.blast.ncbiblast.blast_filter", multirecord = 0, ) search.add(blast) blastp = FormatGroup( name = "blastp", multirecord = 0, ) blast.add(blastp) blastn = FormatGroup( name = "blastn", multirecord = 0, ) blast.add(blastn) blastx = FormatGroup( name = "blastx", multirecord = 0, ) blast.add(blastx) tblastn = FormatGroup( name = "tblastn", multirecord = 0, ) blast.add(tblastn) tblastx = FormatGroup( name = "tblastx", multirecord = 0, ) blast.add(tblastx) ### NCBI BLASTs ncbi_blastp = FormatObject( name = "ncbi-blastp", abbrev = "ncbi_blastp", expression = "Bio.expressions.blast.ncbiblast.blastp", filter = "Bio.expressions.blast.ncbiblast.blastp_appheader", multirecord = 0, ) blastp.add(ncbi_blastp) ncbi_blastn = FormatObject( name = "ncbi-blastn", abbrev = "ncbi_blastn", expression = "Bio.expressions.blast.ncbiblast.blastn", filter = "Bio.expressions.blast.ncbiblast.blastn_appheader", multirecord = 0, ) blastn.add(ncbi_blastn) ncbi_blastx = FormatObject( name = "ncbi-blastx", abbrev = "ncbi_blastx", expression = "Bio.expressions.blast.ncbiblast.blastx", filter = "Bio.expressions.blast.ncbiblast.blastx_appheader", multirecord = 0, ) blastx.add(ncbi_blastx) ncbi_tblastn = FormatObject( name = "ncbi-tblastn", abbrev = "ncbi_tblastn", expression = "Bio.expressions.blast.ncbiblast.tblastn", filter = "Bio.expressions.blast.ncbiblast.tblastn_appheader", multirecord = 0, ) tblastn.add(ncbi_tblastn) ncbi_tblastx = FormatObject( name = "ncbi-tblastx", abbrev = "ncbi_tblastx", expression = "Bio.expressions.blast.ncbiblast.tblastx", filter = "Bio.expressions.blast.ncbiblast.tblastx_appheader", multirecord = 0, ) tblastx.add(ncbi_tblastx) ### WU-BLASTs wu_blastp = FormatObject( name = "wu-blastp", abbrev = "wu_blastp", expression = "Bio.expressions.blast.wublast.blastp", filter = "Bio.expressions.blast.wublast.blastp_appheader", multirecord = 0, ) blastp.add(wu_blastp) wu_blastn = FormatObject( name = "wu-blastn", abbrev = "wu_blastn", expression = "Bio.expressions.blast.wublast.blastn", filter = "Bio.expressions.blast.wublast.blastn_appheader", multirecord = 0, ) blastn.add(wu_blastn) wu_blastx = FormatObject( name = "wu-blastx", abbrev = "wu_blastx", expression = "Bio.expressions.blast.wublast.blastx", filter = "Bio.expressions.blast.wublast.blastx_appheader", multirecord = 0, ) blastx.add(wu_blastx)