METATOOL OUTPUT Version 3.5 (28.03.2001) C:\METATOOL\META35~1.EXE INPUT FILE: EXAMPLE12.TXT INTERNAL METABOLITES: 6 REACTIONS: 3 2 external dehydroascorbate 1 int L-Ascorbate 1 int H2O2 1 int H2O 1 int Glutathione 1 int oxidized_glutathione 1 int ascorbate 7 metabolites, 8 is the summarized frequency edges frequency of nodes 0 0 1 6 2 1 STOICHIOMETRIC MATRIX matrix dimension r6 x c3 0 -1 0 0 -1 0 0 2 0 -2 0 0 1 0 0 1 0 0 The following line indicates reversible (0) and irreversible reactions (1) 0 1 1 rows and columns are sorted as declared in the inputfile NOT BALANCED INTERNAL METABOLITES L-Ascorbate H2O2 H2O Glutathione oxidized_glutathione ascorbate KERNEL matrix dimension r1 x c3 0 0 1 3 reactions (columns) are sorted in the same order as in the ENZREV ENZIRREV section. enzymes 1: 1.8.5.1 irreversible overall reaction - not found - The remaining overall reactions perform no net transformation of external metabolites. SUBSETS OF REACTIONS matrix dimension r1 x c3 0 0 1 3 reactions (columns) are sorted in the same order as in the ENZREV ENZIRREV section. enzymes 1: 1.8.5.1 irreversible overall reaction - not found - The remaining overall reactions perform no net transformation of external metabolites. REDUCED SYSTEM with 6 branch point metabolites in 1 reactions (columns) matrix dimension r0 x c1 The following line indicates reversible (0) and irreversible reactions (1) 1 -> Branch metabolites are : met cons built reactions -> No branch metabolites are : met cons built reactions L-Ascorbate 1 0 1 i H2O2 1 0 1 i H2O 0 1 1 i Glutathione 1 0 1 r oxidized_glutathione 0 1 1 r ascorbate 0 1 1 r CONVEX BASIS matrix dimension r1 x c3 0 0 1 enzymes 1: 1.8.5.1 irreversible overall reaction - not found - The remaining overall reactions perform no net transformation of external metabolites. CONSERVATION RELATIONS matrix dimension r4 x c6 1 -1 0 0 0 0 2 0 1 0 0 0 0 0 0 1 2 0 0 0 0 1 0 2 1 : L-Ascorbate + H2O2 = const 2 : L-Ascorbate + H2O = const 3 : Glutathione + oxidized_glutathione = const 4 : Glutathione + ascorbate = const ELEMENTARY MODES matrix dimension r1 x c3 0 0 1 3 reactions (columns) are sorted in the same order as in the ENZREV ENZIRREV section. enzymes 1: 1.8.5.1 irreversible overall reaction - not found - The remaining overall reactions perform no net transformation of external metabolites. The elementary modes ARE EQUAL to convex basis.