=head1 NAME

randommodel module - part of the Wise2 package

=head1 SYNOPSIS

This module contains the following objects

=over

=item RandomModelDNA

=item RandomModel


=back

=head1 DESCRIPTION

=head2 Object RandomModelDNA

=over

=item base[5]

 Type [Probability] Scalar No documentation

=item name

 Type [char *] Scalar No documentation



=back

No documentation for RandomModelDNA

=head2 Member functions of RandomModelDNA

=over

=item hard_link_RandomModelDNA

&Wise2::RandomModelDNA::hard_link_RandomModelDNA(obj)

  Bumps up the reference count of the object
  Meaning that multiple pointers can 'own' it



  Argument obj          [UNKN ] Object to be hard linked [RandomModelDNA *]
  Return [UNKN ] Undocumented return value [RandomModelDNA *]


=item alloc

&Wise2::RandomModelDNA::alloc(void)

  Allocates structure: assigns defaults if given 



  Return [UNKN ] Undocumented return value [RandomModelDNA *]


=item set_name

&Wise2::RandomModelDNA::set_name(obj,name)

  Replace member variable name
  For use principly by API functions



  Argument obj          [UNKN ] Object holding the variable [RandomModelDNA *]
  Argument name         [OWNER] New value of the variable [char *]
  Return [SOFT ] member variable name [boolean]


=item name

&Wise2::RandomModelDNA::name(obj)

  Access member variable name
  For use principly by API functions



  Argument obj          [UNKN ] Object holding the variable [RandomModelDNA *]
  Return [SOFT ] member variable name [char *]


=back

=head2 Object RandomModel

=over

=item aminoacid[26]

 Type [Probability] Scalar No documentation

=item name

 Type [char *] Scalar No documentation



=back

No documentation for RandomModel

=head2 Member functions of RandomModel

=over

=item hard_link_RandomModel

&Wise2::RandomModel::hard_link_RandomModel(obj)

  Bumps up the reference count of the object
  Meaning that multiple pointers can 'own' it



  Argument obj          [UNKN ] Object to be hard linked [RandomModel *]
  Return [UNKN ] Undocumented return value [RandomModel *]


=item alloc

&Wise2::RandomModel::alloc(void)

  Allocates structure: assigns defaults if given 



  Return [UNKN ] Undocumented return value [RandomModel *]


=item set_name

&Wise2::RandomModel::set_name(obj,name)

  Replace member variable name
  For use principly by API functions



  Argument obj          [UNKN ] Object holding the variable [RandomModel *]
  Argument name         [OWNER] New value of the variable [char *]
  Return [SOFT ] member variable name [boolean]


=item name

&Wise2::RandomModel::name(obj)

  Access member variable name
  For use principly by API functions



  Argument obj          [UNKN ] Object holding the variable [RandomModel *]
  Return [SOFT ] member variable name [char *]


=back

=over

=item RandomModelDNA_std

&Wise2::RandomModelDNA_std(void)

  Returns a structure with 0.25 set in each place



  Return [UNKN ] Undocumented return value [RandomModelDNA *]


=item default_RandomModel

&Wise2::default_RandomModel(void)

  Gives a default random model numbers from
  swissprot34- via the HMMEr1 package



  Return [UNKN ] Undocumented return value [RandomModel *]


=back