%{
#include "dyna.h"



%}



matrix abc 
query  type="PROTEIN"  name="query"  
target type="PROTEIN"  name="target"
resource type="COMPMAT" name="comp"
resource type="int"    name="a"
resource type="int"    name="b"
resource type="int"    name="c"
state MATCH offi="1" offj="1" 
	calc="AAMATCH(comp,AMINOACID(query,i),AMINOACID(target,j))"
	source MATCH
		calc="0"
		endsource
	source INSERT
		calc="0"
		endsource
	source START
		calc="0"
		endsource
	query_label  SEQUENCE
	target_label SEQUENCE
endstate
state INSERT 
	source MATCH offi="1" offj="0"
		calc="a + b"
		target_label INSERT
		endsource
	source MATCH offi="0" offj="1"
		calc="a + b"
		query_label INSERT
		endsource
	source MATCH offi="1" offj="1"
		calc="a + c"
		endsource
	source INSERT offi="1" offj="0"
		calc="b"
		target_label INSERT
		endsource
	source INSERT offi="0" offj="1"
		calc="b"
		query_label INSERT
		endsource
	source INSERT offi="1" offj="1"
		calc="c"
		endsource
	query_label  UNMATCHED_SEQUENCE
	target_label UNMATCHED_SEQUENCE
endstate
state START !special !start
	query_label  START
	target_label START
endstate
state END !special !end
	source MATCH 
		calc="0"
		endsource
	query_label  END
	target_label END
endstate
endmatrix


%{
#include "abc.h"

%}