%{
#include "genewisemodeldb.h"


%}


struct GeneWiseQuickDB
GeneWiseDB * gwdb;
%info
This is a database stream of
GeneWiseScoreFlat objects, layered
ontop of a vanilla genewisedb.

The GeneWiseScoreFlat objects give
around a 10% speed up due to them
being allocated as a single block
of memory that then gets accessed

This object is a very thin layer over
the genewisedb object, which itself handles
the actual HMM stuff via threestatedb object.
So if you want to discover how HMMs are
actually being streamed into the database,
look in there.
%%


%{
#include "gwquickdb.h"


%func
inits a genewisequick database. 
%%
GeneWiseScoreFlat * init_GeneWiseQuickDB(GeneWiseQuickDB * gdb,int * return_status)
{
  GeneWiseScore * gws;
  
  gws = init_GeneWiseDB(gdb->gwdb,return_status);
  if( gws != NULL ) {
    return GeneWiseScoreFlat_from_GeneWiseScore(gws);
  }

}


%func
Reloads a genewisequick database

%%
GeneWiseScoreFlat * reload_GeneWiseQuickDB(GeneWiseScoreFlat * prev,GeneWiseQuickDB * gdb,int * return_status)
{
  GeneWiseScore * gws;

  if( prev != NULL )
    free_GeneWiseScoreFlat(prev);

  gws = reload_GeneWiseDB(NULL,gdb->gwdb,return_status);
  if( gws != NULL ) {
    return GeneWiseScoreFlat_from_GeneWiseScore(gws);
  }

}


%func
closes a GeneWiseDB
%%
boolean close_GeneWiseQuickDB(GeneWiseScoreFlat * gws,GeneWiseQuickDB * gdb)
{
  if( gws != NULL )
    free_GeneWiseScoreFlat(gws);

  return close_GeneWiseDB(NULL,gdb->gwdb);
}

%func
adds dataentry stuff to a query.
%%
boolean dataentry_add_GeneWiseQuickDB(DataEntry * de,GeneWiseScoreFlat * gws,GeneWiseQuickDB * gdb)
{
  return dataentry_add_GeneWiseDB(de,NULL,gdb->gwdb);
}

%func
Makes a new genewisequickdb from a genewisemodeldb
%arg
gwdb r genewisedb - hard links as it enters
%%
GeneWiseQuickDB * GeneWiseQuickDB_from_GeneWiseDB(GeneWiseDB * gwdb)
{
  GeneWiseQuickDB * out;

  out = GeneWiseQuickDB_alloc();
  out->gwdb = hard_link_GeneWiseDB(gwdb);

  return out;
}