------------------------------------------------------------- Wise2 - Protein vs. Protein Program: pswdb version: $Name: wise2-2-0 $ released: unreleased This program is freely distributed under a Gnu Public License. See -version for more info on copyright Bugs and credits to: Richard Copley Ewan Birney ------------------------------------------------------------- Algorithm type: Smith/Waterman Gap open: 12 Gap extension: 2 Query info from: road.pep Database info from: pep.fa Comp Matrix: blosum62.bla [Warning: Can't fit histogram to a db smaller than 1,000] #High Score list ------------------------------------------------------------- Probe roa1_drome Dbase ROA1_HUMAN + 833 0 Probe roa1_drome Dbase SW:ROA1_XENLA + 773 0 Probe roa1_drome Dbase Q22037 + 662 0 #Alignments ------------------------------------------------------------- >roa1_drome vs ROA1_HUMAN [1] P: 0 Sc: 833 aln_len: 368 p_len: 365 t_len: 371 match: 93.7% ID: 47.8% probe: 22 DSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKR +S EPE +RKLFIGGL + TTDE+L++HFE+WG + D VVM+DP TKR target: 4 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKR probe: 71 SRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGA SRGFGF+TY+ +D A +RPHK+DGRVVEPKRAV R+D P A target: 53 SRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHL probe: 120 TVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFV TVKK+FVG +K+D +E +RDYF+ +G I I I+ D+ +GKKRGFAFV target: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV probe: 169 EFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQ------NDQQGGGGGR FDD+D VDK+V+QK H +NG +V+KAL KQ + Q+G G target: 151 TFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSG probe: 212 GGPGGRAGGNRGNMGGGNYGNQNGGGNW--NNGGNNWGNNRGGNDNWGN GGR GG GN G GN +G G + + GG +G + G + +GN target: 200 NFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGN probe: 259 NS-FGGGG----GGGGGYGGGNNSWGNN----------NPWDNGNGGGN + +GGGG GG GYG G +GN + ++NG G G target: 249 DGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGRGF probe: 293 FGGGGNNWNNGG--NDFGGYQ-QNYGGGPQRGGGNFNNNRMQPYQGGGG GG G+N+ GG NDFG Y Q+ GP +GG NF PY GGG target: 298 GGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGG-NFGGRSSGPYGGGGQ probe: 339 FKAGGGNQGNYGGNNQGFNNGGNNR + A NQG YGG++ + G R target: 346 YFAKPRNQGGYGGSSSSSSYGSGRR ------------------------------------------------------------- >roa1_drome vs SW:ROA1_XENLA [2] P: 0 Sc: 773 aln_len: 359 p_len: 365 t_len: 365 match: 90.1% ID: 47.4% probe: 26 EPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGF EPE +RKLFIGGL + TTDE+L+ HFE+WG + D VVM+DP +KRSRGF target: 9 EPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGF probe: 75 GFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKK GF+TY + +D A +RPHK+DGRVVEPKRAV R+D P A TVKK target: 58 GFVTYLSTDEVDAAMTARPHKVDGRVVEPKRAVSREDSSRPGAHLTVKK probe: 124 LFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDD +FVG +K+D +E +R+YF+ +G I I I+ D+ +GKKRGFAFV F+D target: 107 IFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFED probe: 173 YDPVDKVVLQKQHQLNGKMVDVKKALPKQ-------NDQQGGGGGR--- +D VDK+V+QK H +N V+KAL KQ + ++ GG G target: 156 HDSVDKIVIQKYHTVNNHNSQVRKALSKQEMASVSGSQRERGGSGNYGS probe: 212 ---------GGPGGRAGGNRGNMGGGNYGNQNGGGNWNNG-GNNWGNNR GG GG GGNRG GGG +GN+ GG+ NG G W target: 205 RGGFGNDNFGGRGGNFGGNRG--GGGGFGNRGYGGDGYNGDGQLWWQPS probe: 251 --GGNDNWGNNSFGG-GGGGGGGYGGGNNS--WGNNNPWDNGNGGGN-F G N +G GG G G GGGYGGG +G N +D NGGG+ F target: 252 LLGWNRGYGAGQGGGYGAGQGGGYGGGGQGGGYGGNGGYDGYNGGGSGF probe: 294 GGGGNNWNNGG--NDFGGY--QQNYGGGPQRGGGNFNNNRMQPYQGGGG G G N+ + G NDFG Y Q + GP +GG PY GG G target: 301 SGSGGNFGSSGGYNDFGNYNSQSSSNFGPMKGGNYGGGRNSGPYGGGYG probe: 339 FKAGGGNQGNYGGNNQ + + G YGG + target: 350 GGSASSSSG-YGGGRR ------------------------------------------------------------- >roa1_drome vs Q22037 [3] P: 0 Sc: 662 aln_len: 338 p_len: 365 t_len: 346 match: 91.8% ID: 40.2% probe: 22 DSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKR D+ EPE++RK+F+GGL TTD+ ++ + ++G I D++VM+DP TKR target: 14 DASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKR probe: 71 SRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGA SRGFGF+T+S + +D A K RPH IDG+ V+PKRAVPR D + + target: 63 SRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNV probe: 120 TVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFV + K+L+V +++DH E + +YF +G + I++DK T K RGF FV target: 112 STKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFV probe: 169 EFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQNDQQGGGGGRGGPGGR FDD+D VD+ VLQK H +NG DV+K L K D+ R target: 161 TFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSK--DEMSKAQMNRDRETR probe: 218 AGGNRGNMGGGNYGNQNGGGNWNNGGNNWGNNR-GGNDNWGNNSFGGGG G +R GG G GGG W G GG G +GG target: 208 GGRSRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDY probe: 266 GGGGGY--GGGNNSWGNNNPWDNGNGGGNFGGGGNNWNNGGNDFGGYQQ GGG G GGG WG G G G GGGG G QQ target: 257 GGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQ---QQQ probe: 313 NYGGGPQRGGGNFNNNRMQPYQGGGGFKAGGGNQGNYGGNNQGF GGPQ+GGG QGG G ++G + G N+ + target: 303 GGWGGPQQGGGGGGWGGQGQQQGGWGGQSGAQQWAHAQGGNRNY -------------------------------------------------------------