prompt <-
function(object, filename = NULL, name = NULL, ...)
UseMethod("prompt")
prompt.default <-
function(object, filename = NULL, name = NULL,
force.function = FALSE, ...)
{
paste0 <- function(...) paste(..., sep = "")
is.missing.arg <- function(arg)
typeof(arg) == "symbol" && deparse(arg) == ""
if(missing(name))
name <- if(is.character(object))
object
else {
name <- substitute(object)
##
## This used to be:
## if(is.language(name) && !is.name(name))
## name <- eval(name)
## as.character(name)
## but what is this trying to do?
## It seems that the eval() will typically give the given
## object, and surely we cannot use that as the name (even
## if the subsequent as.character() does not fail ...)
## Better to be defensive about this, and handle only cases
## we know will make sense ...
if(is.name(name))
as.character(name)
else if(is.call(name)
&& (as.character(name[[1]]) %in%
c("::", ":::", "getAnywhere"))) {
name <- as.character(name)
name[length(name)]
}
else
stop("cannot determine a usable name")
##
}
if(is.null(filename))
filename <- paste0(name, ".Rd")
x <- if(!missing(object))
object
else {
## Better than get(); works when called in fun :
x <- get(name, envir = parent.frame())
}
##
## If not a function or forced to document a function (?), always
## assume data set.
if(!(is.function(x) || force.function))
return(promptData(x, filename = filename, name = name))
##
n <- length(argls <- formals(x))
if(n > 0) {
arg.names <- arg.n <- names(argls)
arg.n[arg.n == "..."] <- "\\dots"
}
## Construct the 'call' for \usage.
Call <- paste0(name, "(")
for(i in seq_len(n)) { # i-th argument
Call <- paste0(Call, arg.names[i],
if(!is.missing.arg(argls[[i]]))
paste0(" = ",
paste(deparse(argls[[i]], width.cutoff= 500),
collapse="\n")))
if(i != n) Call <- paste0(Call, ", ")
}
## Construct the definition for \examples.
x.def <- attr(x, "source")
if(is.null(x.def))
x.def <- deparse(x)
if(any(br <- substr(x.def, 1, 1) == "}"))
x.def[br] <- paste(" ", x.def[br])
## escape "%" :
x.def <- gsub("%", "\\\\%", x.def)
Rdtxt <-
list(name = paste0("\\name{", name, "}"),
aliases = c(paste0("\\alias{", name, "}"),
paste("%- Also NEED an '\\alias' for EACH other topic",
"documented here.")),
title = "\\title{ ~~function to do ... ~~ }",
description = c("\\description{",
paste(" ~~ A concise (1-5 lines) description of what",
"the function does. ~~"),
"}"),
usage = c("\\usage{", paste0(Call, ")"), "}",
paste("%- maybe also 'usage' for other objects",
"documented here.")),
arguments = NULL,
details = c("\\details{",
paste(" ~~ If necessary, more details than the",
"description above ~~"),
"}"),
value = c("\\value{",
" ~Describe the value returned",
" If it is a LIST, use",
" \\item{comp1 }{Description of 'comp1'}",
" \\item{comp2 }{Description of 'comp2'}",
" ...",
"}"),
references = paste("\\references{ ~put references to the",
"literature/web site here ~ }"),
author = "\\author{ ~~who you are~~ }",
note = c("\\note{ ~~further notes~~ ",
"",
paste(" ~Make other sections like Warning with",
"\\section{Warning }{....} ~"),
"}"),
seealso = paste("\\seealso{ ~~objects to See Also as",
"\\code{\\link{help}}, ~~~ }"),
examples = c("\\examples{",
"##---- Should be DIRECTLY executable !! ----",
"##-- ==> Define data, use random,",
"##-- or do help(data=index) for the standard data sets.",
"",
"## The function is currently defined as",
x.def,
"}"),
keywords = c(paste("% Add one or more standard keywords,",
"see file 'KEYWORDS' in the"),
"% R documentation directory.",
"\\keyword{ ~kwd1 }",
"\\keyword{ ~kwd2 }% __ONLY ONE__ keyword per line"))
Rdtxt$arguments <- if(n > 0)
c("\\arguments{",
paste0(" \\item{", arg.n, "}{",
" ~~Describe \\code{", arg.n, "} here~~ }"),
"}") ## else NULL
if(is.na(filename)) return(Rdtxt)
cat(unlist(Rdtxt), file = filename, sep = "\n")
message(gettextf("Created file named '%s'.", filename),
"\n",
gettext("Edit the file and move it to the appropriate directory."),
domain = NA)
invisible(filename)
}
prompt.data.frame <-
function(object, filename = NULL, name = NULL, ...)
{
paste0 <- function(...) paste(..., sep = "")
if(missing(name))
name <-
if(is.character(object))
object
else {
name <- substitute(object)
if(is.name(name))
as.character(name)
else
stop("cannot determine a usable name")
}
if(is.null(filename))
filename <- paste0(name, ".Rd")
x <- if(!missing(object))
object
else {
## Better than get(); works when called in fun :
x <- get(name, envir = parent.frame())
}
##
## Always assume data set ???
promptData(x, filename = filename, name = name)
##
}
promptData <-
function(object, filename = NULL, name = NULL)
{
paste0 <- function(...) paste(..., sep = "")
if(missing(name))
name <-
if(is.character(object))
object
else {
name <- substitute(object)
if(is.name(name))
as.character(name)
else
stop("cannot determine a usable name")
}
if(is.null(filename))
filename <- paste0(name, ".Rd")
x <- if(!missing(object))
object
else {
## Better than get(); works when called in fun :
x <- get(name, envir = parent.frame())
}
## Construct the format.
if(is.data.frame(x)) {
fmt <- c("\\format{",
paste(" A data frame with",
nrow(x),
"observations on the following",
ifelse(ncol(x) == 1,
"variable.",
paste(ncol(x), "variables."))),
" \\describe{")
for(i in names(x)) {
xi <- x[[i]]
fmt <-
c(fmt,
paste0(" \\item{\\code{", i, "}}{",
if(inherits(xi, "ordered")) {
paste("an", data.class(xi),
"factor with levels",
paste0("\\code{", levels(xi), "}",
collapse = " < "),
collapse = " ")
} else if(inherits(xi, "factor")) {
paste("a factor with levels",
paste0("\\code{", levels(xi), "}",
collapse = " "),
collapse = " ")
} else if(is.vector(xi)) {
paste("a", data.class(xi), "vector")
} else if(is.matrix(xi)) {
paste("a matrix with", ncol(xi), "columns")
} else {
paste("a", data.class(xi))
},
"}"))
}
fmt <- c(fmt, " }", "}")
}
else {
tf <- tempfile(); on.exit(unlink(tf))
sink(tf) ; str(object) ; sink()
fmt <- c("\\format{",
" The format is:",
scan(tf, "", quiet = !getOption("verbose"), sep = "\n"),
"}")
}
Rdtxt <-
list(name = paste0("\\name{", name, "}"),
aliases = paste0("\\alias{", name, "}"),
docType = "\\docType{data}",
title = "\\title{ ~~ data name/kind ... ~~}",
description = c("\\description{",
" ~~ A concise (1-5 lines) description of the dataset. ~~",
"}"),
usage = paste0("\\usage{data(", name, ")}"),
format = fmt,
details = c("\\details{",
paste(" ~~ If necessary, more details than the",
"__description__ above ~~"),
"}"),
source = c("\\source{",
paste(" ~~ reference to a publication or URL",
"from which the data were obtained ~~"),
"}"),
references = c("\\references{",
" ~~ possibly secondary sources and usages ~~",
"}"),
examples = c("\\examples{",
paste0("data(", name, ")"),
paste0("## maybe str(", name, ") ; plot(", name, ") ..."),
"}"),
keywords = "\\keyword{datasets}")
if(is.na(filename)) return(Rdtxt)
cat(unlist(Rdtxt), file = filename, sep = "\n")
message(gettextf("Created file named '%s'.", filename),
"\n",
gettext("Edit the file and move it to the appropriate directory."),
domain = NA)
invisible(filename)
}
promptPackage <-
function(package, lib.loc = NULL, filename = NULL, name = NULL, final = FALSE)
{
## need to do this as packageDescription and library(help=) have
## different conventions
if (is.null(lib.loc)) lib.loc <- .libPaths()
paste0 <- function(...) paste(..., sep = "")
insert1 <- function(field, new) {
prev <- Rdtxt[[field]]
Rdtxt[[field]] <<- c(prev[-length(prev)], new, prev[length(prev)])
}
insert2 <- function(field, new) insert1(field, paste("~~", new, "~~"))
tabular <- function(col1, col2)
c("\\tabular{ll}{", paste0(col1, " \\tab ", col2, "\\cr"), "}")
if(missing(name))
name <- paste0(package, "-package");
if(is.null(filename))
filename <- paste0(name, ".Rd")
Rdtxt <-
list(name = paste0("\\name{", name, "}"),
aliases = paste0("\\alias{", name, "}"),
docType = "\\docType{package}",
title = c("\\title{", "}"),
description = c("\\description{","}"),
details = c("\\details{","}"),
author = c("\\author{","}"),
references = character(0),
keywords = c("\\keyword{ package }")
)
desc <- packageDescription(package, lib.loc)
if (length(desc) > 1) {
info <- library(help = package, lib.loc = lib.loc,
character.only = TRUE)
if (!length(grep(paste0("^", package, " "), info$info[[2]])))
Rdtxt$aliases <- c(Rdtxt$aliases, paste0("\\alias{", package, "}"))
insert1("title", desc$Title)
insert1("description", desc$Description)
insert1("author", c(desc$Author, "",
paste(gettext("Maintainer:"),desc$Maintainer)))
desc <- desc[!(names(desc) %in%
c("Title", "Description", "Author", "Maintainer"))]
insert1("details", tabular(paste0(names(desc), ":"), unlist(desc)))
if (!is.null(info$info[[2]]))
insert1("details", c("", gettext("Index:"), "\\preformatted{",
info$info[[2]], "}"))
if (!is.null(info$info[[3]]))
insert1("details",
c("",
gettext("Further information is available in the following vignettes:"),
tabular(paste0("\\code{", info$info[[3]][,1], "}"),
info$info[[3]][,2])))
}
if (!final) {
insert2("title", gettext("package title"))
insert2("description",
gettext("A concise (1-5 lines) description of the package"))
insert2("details",
strwrap(gettext("An overview of how to use the package, including the most important functions")))
insert2("author",
gettext("The author and/or maintainer of the package"))
Rdtxt$references <-
c("\\references{",
paste("~~",
gettext("Literature or other references for background information"),
"~~"),
"}")
Rdtxt$seealso <- c("\\seealso{", "}")
insert2("seealso",
c(gettext("Optional links to other man pages, e.g."),
"\\code{\\link[:-package]{}}"))
Rdtxt$examples <- c("\\examples{","}")
insert2("examples",
gettext("simple examples of the most important functions"))
insert2("keywords",
strwrap(gettext("Optionally other standard keywords, one per line, from file KEYWORDS in the R documentation directory")))
}
if(is.na(filename)) return(Rdtxt)
cat(unlist(Rdtxt), file = filename, sep = "\n")
message(gettextf("Created file named '%s'.", filename),
"\n",
gettext("Edit the file and move it to the appropriate directory."),
domain = NA)
invisible(filename)
}