/*
Copyright (C) 2004 by Andrew Lloyd Rohl
andrew@ivec.org
This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; either version 2
of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
The GNU GPL can also be found at http://www.gnu.org
*/
#include <math.h>
#include <stdio.h>
#include <string.h>
#include "gdis.h"
#include "coords.h"
#include "file.h"
#include "parse.h"
#include "model.h"
#include "interface.h"
/* main structures */
extern struct sysenv_pak sysenv;
extern struct elem_pak elements[];
gint read_nw(gchar *filename, struct model_pak *data)
{
FILE *fp;
gchar line[LINELEN], *name;
fp = fopen(filename, "rt");
if (!fp)
{
sprintf(line, "Unable to open file %s\n", filename);
gui_text_show(ERROR, line);
return(1);
}
else
{
name = g_path_get_basename(filename);
sprintf(line, "Opening %s: \n", name);
g_free(name);
gui_text_show(STANDARD, line);
}
strcpy(data->filename, filename);
g_free(data->basename);
data->basename = strdup_basename(filename);
model_prep(data);
return(0);
}
/*******************************************/
/* read single NWChem output configuration */
/*******************************************/
#define DEBUG_READ_NWOUT 0
gint read_nwout_block(FILE *fp, struct model_pak *model)
{
gint num_tokens;
gchar **buff, line[LINELEN], *text;
GString *title, *gstring;
GSList *clist;
struct core_pak *core;
clist = model->cores;
/* skip until get a 1 in first column for first coordinate */
if (fgetline(fp, line))
return(1);
while (g_ascii_strncasecmp(line, " 1", 5) != 0)
{
if (fgetline(fp, line))
return(1);
}
buff = tokenize(line, &num_tokens);
while (num_tokens > 0)
{
if (clist)
{
core = (struct core_pak *) clist->data;
clist = g_slist_next(clist);
}
else
{
core = new_core(*(buff+1), model);
model->cores = g_slist_append(model->cores, core);
}
core->x[0] = str_to_float(*(buff+3));
core->x[1] = str_to_float(*(buff+4));
core->x[2] = str_to_float(*(buff+5));
#if DEBUG_READ_NWOUT
printf("new coords %f %f %f\n", core->x[0], core->x[1], core->x[2]);
#endif
/* get next line */
g_strfreev(buff);
if (fgetline(fp, line))
return(2);
buff = tokenize(line, &num_tokens);
}
g_strfreev(buff);
/* read until get the details of the current optimisation step */
while (g_ascii_strncasecmp(line, "@", 1) != 0)
{
if (fgetline(fp, line))
return(0);
}
buff = tokenize(line, &num_tokens);
while (g_ascii_strncasecmp(line, "@", 1) == 0)
{
if (g_ascii_isdigit(buff[1][0]))
{
text = format_value_and_units(*(buff+2), 5);
gstring = g_string_new(text);
g_free(text);
g_string_append(gstring, " a.u.");
property_add_ranked(3, "Energy", gstring->str, model);
g_string_free(gstring, TRUE);
model->nwchem.energy = str_to_float(*(buff+2));
model->nwchem.max_grad = str_to_float(*(buff+4));
text = format_value_and_units(*(buff+5), 5);
gstring = g_string_new(text);
g_free(text);
g_string_append(gstring, " a.u./A");
property_add_ranked(4, "RMS Gradient", gstring->str, model);
g_string_free(gstring, TRUE);
model->nwchem.rms_grad = str_to_float(*(buff+5));
model->nwchem.have_energy = model->nwchem.have_max_grad = model->nwchem.have_rms_grad = TRUE;
}
/* get next line */
g_strfreev(buff);
if (fgetline(fp, line))
return(2);
buff = tokenize(line, &num_tokens);
}
/* has the optimiser finished successfully? Looking for 4 ok's */
if (num_tokens == 4)
model->nwchem.min_ok = TRUE;
g_free(model->title);
title = g_string_new("");
g_string_append_printf(title, "E");
g_string_append_printf(title, "(DFT)");
g_string_append_printf(title, " = %.5f au", model->nwchem.energy);
g_string_append_printf(title, ", grad = %.5f", model->nwchem.rms_grad);
model->title = g_strdup(title->str);
g_string_free(title, TRUE);
return(0);
}
/*******************************/
/* NWChem output frame reading */
/*******************************/
gint read_nwout_frame(FILE *fp, struct model_pak *model)
{
return(read_nwout_block(fp, model));
}
/********************************/
/* Read in a NWChem output file */
/********************************/
gint read_nwout(gchar *filename, struct model_pak *model)
{
gint frame;
gchar line[LINELEN];
FILE *fp;
fp = fopen(filename, "rt");
if (!fp)
return(1);
frame=0;
while (!fgetline(fp, line))
{
if (g_strrstr(line, "Geometry \"geometry\" -> \"geometry\"") != NULL)
{
/* go through all frames to count them */
add_frame_offset(fp, model);
read_nwout_block(fp, model);
frame++;
if (model->nwchem.min_ok)
break;
}
}
/* done */
strcpy(model->filename, filename);
g_free(model->basename);
model->basename = strdup_basename(filename);
model->num_frames = model->cur_frame = frame;
model->cur_frame--;
model_prep(model);
return(0);
}
syntax highlighted by Code2HTML, v. 0.9.1